Hg_chrom8_TN10mRNA_15784
Organism: Heterodera glycines Gene Locus: chr8:5890584-5892491 Feature type: polypeptideProtein Sequence
Length: 420
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.052 | 0.831 | 0.866 | 1.067 | 0.675 | 0.672 | 1.304 | 1.429 | 1.111 | 1.287 | 0.902 | 1.12 | 1.521 | 1.19 | 0.632 | 1.293 | 0.468 | 1.118 | 0.733 | 0.49 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14915
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.981
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm
|
— | — | — | — |
46-67
|
0.918
|
— | — |
0.000
|
— | — |
0.184
|
0.130
|
0.009
|
0.449
|
0.169
|
0.329
|
0.176
|
0.190
|
0.119
|
0.202
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012066
|
1.000
|
1.000
|
Hsc_gene_6483.t1
|
Hsc_gene_6483.t1
|
— |
O59028.1 Malate dehydrogenase [Pyrococcus horikoshii OT3]
|
AFG25456.1 f36a2, partial [Meloidogyne incognita]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016491
|
GO:0003674_0.772|GO:0003824_0.684|GO:0008150_0.589
|
IPR003767+61-412_69-402+|IPR036111+66-414+|IPR043143+133-374+|IPR043144+63-132+
|
— |
PF02615+69-402+Malate/L-lactate_dehydrogenase
|
— |
PTHR11091+61-412+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-420
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.896
|
44527.200
|
7.572
|
7.000
|
20.714
|
10.952
|
38.810
|
61.190
|
11.905
|
8.810
|
56.905
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
2392.033
|
4401.047
|
3333.869
|
2694.355
|
2323.258
|
1777.688
|
2633.832
|
2405.974
|
717.341
|
2588.380
|
1786.506
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.630
|
-0.845
|
-0.198
|
-0.246
|
-0.370
|
0.577
|
— | — |
-1.976
|
2.074
|
— | — | — |
No JSON data available for plots.