Hg_chrom8_TN10mRNA_15786
Organism: Heterodera glycines Gene Locus: chr8:5893937-5895230 Feature type: polypeptideProtein Sequence
Length: 207
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.18 | 0.899 | 0.615 | 0.5 | 2.979 | 0.619 | 1.495 | 0.483 | 0.751 | 0.522 | 1.171 | 1.705 | 0.939 | 0.465 | 0.493 | 0.966 | 1.663 | 0.586 | 0.372 | 0.0 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14917
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
19C07|AF490250.2#tn7jg1413.t1
|
19C07|AF4902502#tn7jg1413t1
|
Hsc_gene_6481
|
— | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
nucleus
|
— | — | — | — | — | — |
1-21
|
0.988
|
1.000
|
0.000
|
0.000
|
0.451
|
0.184
|
0.012
|
0.340
|
0.216
|
0.084
|
0.305
|
0.026
|
0.439
|
0.100
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012068
|
1.000
|
1.000
|
Hsc_gene_6481.t1
|
— | — | — |
ADM21466.1 19C07 [Heterodera schachtii];QLK97575.1 secretory protein 19C07 [Heterodera glycines]
|
No
|
-0.240
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-207
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.880
|
21867.760
|
4.117
|
-22.000
|
32.367
|
4.831
|
55.556
|
44.444
|
11.111
|
21.256
|
54.589
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
16874.855
|
371.712
|
9696.284
|
7173.828
|
2079.717
|
366.589
|
534.055
|
294.995
|
61790.279
|
19790.837
|
37790.598
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.476
|
4.133
|
-0.326
|
-1.818
|
-2.489
|
0.554
|
— |
0.994
|
— |
-2.940
|
— | — | — |