Hg_chrom8_TN10mRNA_15789
Organism: Heterodera glycines Gene Locus: chr8:5902713-5908210 Feature type: polypeptideProtein Sequence
Length: 1,329
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.024 | 0.77 | 0.684 | 0.156 | 1.204 | 1.64 | 0.322 | 0.715 | 1.288 | 1.383 | 0.878 | 2.08 | 0.606 | 1.982 | 0.921 | 1.44 | 1.123 | 0.684 | 0.579 | 0.398 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14920
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
0.993
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKRR,KSLRK,RKSSDDERTVPEKKRPKM,KRKSATELHEKATGKRKRM,RKSATELHEKATGKRKRMS
|
— | — | — | — | — | — |
0.000
|
— | — |
0.784
|
0.119
|
0.018
|
0.366
|
0.043
|
0.073
|
0.049
|
0.015
|
0.072
|
0.051
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004774
|
1.000
|
2.000
|
Hsc_gene_6478.t1;Hsc_gene_6478.t2
|
Hsc_gene_6477.t1;Hsc_gene_6478.t1;Hsc_gene_6478.t2
|
— | — |
KAF7627239.1 NARG2_C domain-containing protein [Meloidogyne graminicola]
|
WP_303127212
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-67;202-602;717-781;1329-1329
|
3.000
|
68-201;603-716;782-1328
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.782
|
146372.880
|
6.569
|
0.500
|
22.724
|
5.719
|
49.360
|
50.640
|
11.738
|
10.986
|
50.790
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
blue
|
1365.838
|
1750.712
|
851.282
|
1154.035
|
1428.191
|
1014.058
|
1641.358
|
862.846
|
666.725
|
2212.067
|
1549.777
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.270
|
-0.738
|
0.548
|
0.276
|
-0.479
|
0.705
|
— |
1.069
|
-1.837
|
— | — | — | — |
No JSON data available for plots.