Hg_chrom8_TN10mRNA_15790
Organism: Heterodera glycines Gene Locus: chr8:5909199-5910330 Feature type: polypeptideProtein Sequence
Length: 253
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.735 | 1.011 | 1.078 | 0.136 | 1.12 | 1.115 | 0.941 | 1.186 | 1.669 | 0.908 | 0.599 | 1.86 | 0.769 | 0.684 | 1.291 | 0.903 | 1.296 | 0.898 | 0.304 | 2.093 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14921
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.744
|
0.188
|
0.017
|
0.554
|
0.151
|
0.068
|
0.029
|
0.031
|
0.034
|
0.018
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004775
|
2.000
|
1.000
|
Hsc_gene_6476.t1
|
Hsc_gene_6476.t1
|
— |
Q8LD27.2 Proteasome subunit beta type-6 [Arabidopsis thaliana]
|
OZC08869.1 peptidase, T1 family [Onchocerca flexuosa]
|
No
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004298|GO:0005839|GO:0051603
|
GO:0005575_0.863|GO:0110165_0.821|GO:0005622_0.764|GO:0008150_0.668|GO:0043226_0.639|GO:0043229_0.623|GO:0016020_0.615|GO:0032991_0.614|GO:0003674_0.594|GO:1902494_0.564|GO:0005737_0.557|GO:0043227_0.554|GO:0140535_0.552|GO:0043231_0.550|GO:1905368_0.547|GO:1905369_0.546|GO:0000502_0.545
|
IPR000243+35-50_157-168_193-204+|IPR001353+26-207+|IPR016050+31-78+|IPR023333+24-216_27-207+|IPR029055+22-223_28-224+
|
— |
PF00227+26-207+Proteasome_subunit
|
— |
PTHR32194+24-216+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-253
|
8fz6_V
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.525
|
28642.200
|
5.643
|
-3.000
|
25.296
|
12.648
|
48.221
|
51.779
|
12.648
|
12.648
|
48.617
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
3133.153
|
2680.841
|
2656.334
|
3492.126
|
3753.117
|
3515.793
|
2586.218
|
2986.331
|
2270.944
|
3877.803
|
3189.149
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.241
|
0.244
|
0.502
|
— | — |
-0.433
|
-0.340
|
— | — | — | — | — | — |
No JSON data available for plots.