Hg_chrom8_TN10mRNA_15791
Organism: Heterodera glycines Gene Locus: chr8:5910499-5912601 Feature type: polypeptideProtein Sequence
Length: 500
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.837 | 1.302 | 0.945 | 0.552 | 0.767 | 1.128 | 0.667 | 2.2 | 1.467 | 1.0 | 0.909 | 0.941 | 1.056 | 0.808 | 1.061 | 1.857 | 0.82 | 0.909 | 1.538 | 0.176 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14922
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — |
9-30
|
1.000
|
— | — |
0.000
|
— | — |
0.457
|
0.190
|
0.006
|
0.600
|
0.116
|
0.298
|
0.386
|
0.016
|
0.152
|
0.023
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012071
|
1.000
|
1.000
|
Hsc_gene_6475.t1
|
Hsc_gene_6475.t1
|
— |
Q9Y2I8.2 WD repeat-containing protein 37 [Homo sapiens]
|
KAI3411856.1 WD repeat-containing protein 37 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.775|GO:0005575_0.766|GO:0110165_0.757|GO:0005622_0.673|GO:0016020_0.643|GO:0009987_0.568|GO:0043226_0.566|GO:0043229_0.561|GO:0043227_0.528|GO:0043231_0.528
|
IPR001680+165-207_167-206_211-261_214-261_283-322_286-322_325-364_326-364_332-366_368-406_371-406_375-415_455-496+|IPR015943+92-267_268-499+|IPR019775+393-407+|IPR020472+194-208_351-365_393-407+|IPR036322+165-495+
|
SM00320+165-207_211-261_283-322_325-364_368-406_455-496+
|
PF00400+167-206_214-261_286-322_326-364_371-406+WD_domain,_G-beta_repeat
|
— |
PTHR19855+125-497+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-155
|
1.000
|
156-500
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.911
|
55218.210
|
8.871
|
18.000
|
25.400
|
10.800
|
53.400
|
46.600
|
15.600
|
9.800
|
53.400
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
violet
|
856.740
|
904.768
|
643.827
|
633.915
|
773.801
|
733.194
|
1963.084
|
832.422
|
834.804
|
690.254
|
752.204
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.721
|
-0.650
|
— |
0.255
|
— |
1.432
|
— |
1.380
|
— | — | — | — | — |
No JSON data available for plots.