Hg_chrom8_TN10mRNA_15792
Organism: Heterodera glycines Gene Locus: chr8:5912862-5915202 Feature type: polypeptideProtein Sequence
Length: 571
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.916 | 1.1 | 0.796 | 0.242 | 1.051 | 0.584 | 0.563 | 1.401 | 1.206 | 1.87 | 1.008 | 1.854 | 1.216 | 1.212 | 1.537 | 0.751 | 0.689 | 0.849 | 0.539 | 0.927 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14923
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_described
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
KKRP
|
50-77
|
1.000
|
18-66
|
0.990
|
— | — |
0.000
|
— | — |
0.180
|
0.882
|
0.117
|
0.410
|
0.088
|
0.023
|
0.066
|
0.157
|
0.110
|
0.045
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012072
|
1.000
|
1.000
|
Hsc_gene_6474.t1
|
Hsc_gene_6474.t1
|
— |
Q09298.2 Serine/threonine-protein kinase pink-1, mitochondrial [Caenorhabditis elegans]
|
KAH7720070.1 NKF2 protein kinase [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
GO:0008150_0.864|GO:0009987_0.813|GO:0005575_0.774|GO:0110165_0.772|GO:0065007_0.753|GO:0050789_0.746|GO:0003674_0.711|GO:0005622_0.705|GO:0008152_0.657|GO:0016020_0.622|GO:0044237_0.622|GO:0044238_0.618|GO:0050794_0.618|GO:0005737_0.614|GO:0043170_0.593|GO:0003824_0.587|GO:0050896_0.585|GO:0043226_0.575|GO:0043229_0.551|GO:0019538_0.547|GO:0016740_0.538|GO:0043412_0.523|GO:0043227_0.522|GO:0036211_0.514|GO:0043231_0.505|GO:0051716_0.504
|
IPR000719+131-463_131-473_223-451+|IPR008271+314-326+|IPR011009+122-454+|IPR051511+212-557+
|
SM00220+131-463+
|
PF00069+223-451+Protein_kinase_domain
|
— |
PTHR22972+212-557+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-571
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.800
|
65100.080
|
10.083
|
28.000
|
27.671
|
11.033
|
44.133
|
55.867
|
16.988
|
10.683
|
43.783
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
yellow
|
1056.292
|
968.428
|
1337.882
|
909.713
|
937.305
|
822.348
|
1407.810
|
1414.267
|
877.597
|
1038.923
|
969.783
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.237
|
-0.227
|
-0.448
|
— |
-0.174
|
0.786
|
0.679
|
— | — | — | — | — | — |
No JSON data available for plots.