SCN Proteipedia

Hg_chrom8_TN10mRNA_15796

Organism: Heterodera glycines Gene Locus: chr8:5920635-5926031 Feature type: polypeptide

Protein Sequence

Length: 820

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.078	1.049	0.599	0.589	0.935	0.969	0.668	0.61	1.192	1.252	0.554	1.363	1.524	1.173	1.643	1.498	0.86	0.868	0.657	0.717	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_14927	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	13-Not_described	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	RHRR,RRKVHKSQRKEKRATK,RRDRHASLRRKVHKSQRK,RKKSMADEIVPSIFVPRKR,KKSMADEIVPSIFVPRKRS,RDRHASLRRKVHKSQRKEKRA	32-52	0.998	8-69	0.983	—	—	0.000	—	—	0.114	0.153	0.013	0.127	0.224	0.238	0.151	0.006	0.851	0.062

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012074	1.000	1.000	Hsc_gene_6471.t1	Hsc_gene_6471.t1	—	E7EM37.1 Dopamine receptor 2 [Caenorhabditis elegans]	KAF7629264.1 G_PROTEIN_RECEP_F1_2 domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004930\|GO:0007186\|GO:0016020	GO:0008150_0.969\|GO:0009987_0.913\|GO:0005575_0.909\|GO:0110165_0.905\|GO:0016020_0.868\|GO:0065007_0.865\|GO:0071944_0.853\|GO:0050789_0.845\|GO:0005886_0.844\|GO:0050794_0.825\|GO:0003674_0.809\|GO:0050896_0.781\|GO:0023052_0.764\|GO:0007154_0.757\|GO:0051716_0.734\|GO:0032501_0.716\|GO:0007165_0.690\|GO:0060089_0.659\|GO:0010646_0.655\|GO:0038023_0.655\|GO:0023051_0.653\|GO:0051179_0.634\|GO:0005622_0.633\|GO:0007186_0.625\|GO:0006810_0.624\|GO:0051234_0.624\|GO:0005488_0.616\|GO:0048519_0.580\|GO:0007267_0.569\|GO:0048583_0.568\|GO:0009966_0.563\|GO:0048523_0.547\|GO:0003008_0.546\|GO:0042221_0.534\|GO:0048518_0.524\|GO:0030054_0.513\|GO:0097159_0.505\|GO:0036094_0.504\|GO:0043167_0.503\|GO:1901698_0.502	IPR000276+75-99_88-808_90-284_108-129_154-176_160-176_191-212_240-263_715-793_732-756_775-801+\|IPR017452+90-793+	SM01381+88-808+	PF00001+90-284_715-793+7_transmembrane_receptor_(rhodopsin_family)	—	PTHR24248+65-808+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	452-727	2.000	1-451;728-820	6iql_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.926	90867.000	9.751	28.000	21.829	10.000	45.854	54.146	12.927	8.902	51.951

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	turquoise	823.447	1561.573	2328.237	448.293	199.523	310.696	235.767	2145.243	218.032	728.056	509.474

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.348	-1.938	-2.269	-1.199	0.653	-0.387	2.690	-3.045	—	—	—	—	—

No JSON data available for plots.

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