Hg_chrom8_TN10mRNA_15797
Organism: Heterodera glycines Gene Locus: chr8:5927590-5929268 Feature type: polypeptideProtein Sequence
Length: 294
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.712 | 0.87 | 1.608 | 0.586 | 1.361 | 0.436 | 0.526 | 0.68 | 1.361 | 1.609 | 0.979 | 0.2 | 1.512 | 0.72 | 1.319 | 1.458 | 0.892 | 0.773 | 0.523 | 0.6 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14928
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.944
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— |
RRIESIASTVFELRARDK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.750
|
0.277
|
0.061
|
0.498
|
0.112
|
0.111
|
0.082
|
0.051
|
0.073
|
0.036
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012075
|
1.000
|
1.000
|
Hsc_gene_6470.t1
|
Hsc_gene_6470.t1
|
— |
A1A5V9.1 Elongator complex protein 5 [Danio rerio]
|
KAI3411864.1 Elongator complex protein [Globodera pallida]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0002098|GO:0033588
|
GO:0005575_0.924|GO:0110165_0.913|GO:0005622_0.879|GO:0016020_0.836|GO:0043226_0.820|GO:0005737_0.813|GO:0043229_0.799|GO:0043227_0.774|GO:0043231_0.755|GO:0005634_0.641|GO:0005829_0.622
|
IPR019519+22-168_81-294_230-275+|IPR027417+6-193+
|
— |
PF10483+22-168_230-275+Elongator_subunit_Iki1
|
— |
PTHR15641+81-294+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
275-294
|
1.000
|
1-274
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.596
|
33113.360
|
4.724
|
-10.000
|
31.293
|
9.524
|
52.381
|
47.619
|
14.286
|
17.007
|
49.320
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
turquoise
|
685.354
|
266.771
|
439.287
|
429.182
|
639.246
|
932.029
|
1330.199
|
795.085
|
244.607
|
1003.044
|
678.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.489
|
0.549
|
— |
0.543
|
0.558
|
0.524
|
-0.338
|
0.887
|
— | — | — | — | — |
No JSON data available for plots.