SCN Proteipedia

Hg_chrom8_TN10mRNA_15798

Organism: Heterodera glycines Gene Locus: chr8:5929465-5933161 Feature type: polypeptide

Protein Sequence

Length: 633

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.551	1.249	0.833	1.09	0.974	1.742	0.564	1.264	0.983	0.769	1.221	0.836	1.799	1.58	1.096	1.016	0.881	1.149	0.608	0.511	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_14929	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	23-Female	0.987

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm\|nucleus	—	KRRS,KGRK,RKKEEGGVNVCKKKRVF	—	—	—	—	—	—	0.000	—	—	0.559	0.234	0.009	0.705	0.068	0.070	0.082	0.159	0.043	0.021

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004777	2.000	1.000	Hsc_gene_6469.t1	Hsc_gene_6469.t1	—	O62255.4 m7GpppN-mRNA hydrolase dcap-2 [Caenorhabditis elegans]	KAI1715751.1 dcp2, box A domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000184\|GO:0000290\|GO:0003723\|GO:0016787\|GO:0030145\|GO:0140933	GO:0008150_0.951\|GO:0005575_0.813\|GO:0110165_0.809\|GO:0009987_0.803\|GO:0008152_0.795\|GO:0043170_0.793\|GO:0044238_0.789\|GO:0065007_0.781\|GO:0050789_0.769\|GO:0003674_0.755\|GO:0050794_0.749\|GO:0005622_0.741\|GO:0006139_0.738\|GO:0090304_0.725\|GO:0016070_0.719\|GO:0043226_0.692\|GO:0016071_0.678\|GO:0043229_0.675\|GO:0044237_0.675\|GO:0009058_0.665\|GO:0044249_0.657\|GO:0019222_0.654\|GO:0048519_0.653\|GO:0009059_0.650\|GO:0031323_0.641\|GO:0048523_0.640\|GO:0010467_0.638\|GO:0060255_0.637\|GO:0005737_0.634\|GO:0009889_0.623\|GO:0031326_0.620\|GO:0010556_0.617\|GO:0010468_0.616\|GO:0009892_0.595\|GO:0009056_0.591\|GO:0031324_0.589\|GO:0010605_0.588\|GO:0009057_0.587\|GO:0009890_0.583\|GO:0031327_0.583\|GO:0010558_0.582\|GO:0010629_0.578\|GO:0034655_0.572\|GO:0141188_0.572\|GO:0006401_0.571\|GO:0006402_0.570\|GO:0005488_0.554\|GO:0016020_0.548\|GO:0043228_0.522\|GO:0043232_0.521\|GO:0003824_0.520	IPR000086+210-341_212-329+\|IPR007722+115-209_117-206+\|IPR015797+191-330+\|IPR020084+245-266+\|IPR036189+110-209_117-210+\|IPR044099+212-367+	SM01125+115-209+	PF00293+212-329+NUDIX_domain\|PF05026+117-206+Dcp2,_box_A_domain	G3DSA:3.90.79.10:FF:000003+211-362+M7GpppN-mRNA_hydrolase_isoform_2	PTHR23114+115-585+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-47;422-633	1.000	48-421	5mp0_D	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.912	71817.920	9.106	27.000	26.382	11.532	51.027	48.973	15.956	10.427	50.869

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	red	darkorange	700.261	609.346	649.290	493.879	713.449	676.308	1068.717	587.030	194.455	1118.543	722.506

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.138	-0.440	-0.286	0.499	—	0.670	-0.307	1.006	—	—	—	—	—

No JSON data available for plots.

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