Hg_chrom8_TN10mRNA_15799
Organism: Heterodera glycines Gene Locus: chr8:5940017-5941858 Feature type: polypeptideProtein Sequence
Length: 449
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.596 | 1.088 | 0.891 | 1.075 | 1.188 | 1.085 | 0.901 | 1.448 | 1.138 | 1.144 | 1.114 | 1.834 | 1.485 | 0.514 | 1.182 | 1.209 | 1.022 | 0.844 | 0.343 | 0.524 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14930
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_Clustered
|
0.940
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— |
KRKH
|
— | — |
6-55
|
0.808
|
— | — |
0.000
|
— | — |
0.573
|
0.379
|
0.016
|
0.627
|
0.235
|
0.179
|
0.216
|
0.018
|
0.211
|
0.032
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012076
|
1.000
|
1.000
|
Hsc_gene_6250.t1
|
Hsc_gene_6250.t1
|
— |
Q95221.1 Inositol hexakisphosphate kinase 2 [Oryctolagus cuniculus]
|
KAH7713237.1 Inositol polyphosphate kinase family protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016301|GO:0032958
|
GO:0008150_0.890|GO:0005575_0.831|GO:0110165_0.825|GO:0005622_0.760|GO:0009987_0.633|GO:0003674_0.632|GO:0016020_0.630|GO:0043226_0.608|GO:0043229_0.591|GO:0043227_0.561|GO:0008152_0.559|GO:0043231_0.538
|
IPR005522+6-341_155-337+|IPR038286+21-344+
|
— |
PF03770+155-337+Inositol_polyphosphate_kinase
|
— |
PTHR12400+6-341+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
362-413
|
2.000
|
1-361;414-449
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.793
|
50337.420
|
8.148
|
11.500
|
28.062
|
10.468
|
51.670
|
48.330
|
16.036
|
12.027
|
48.330
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
3593.005
|
5271.329
|
3631.213
|
1863.144
|
1566.472
|
2086.307
|
1431.516
|
4749.656
|
6496.171
|
3122.403
|
4568.304
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.767
|
-1.638
|
-0.854
|
-0.282
|
0.427
|
-0.532
|
1.085
|
-1.589
|
— | — | — | — | — |
No JSON data available for plots.