Hg_chrom8_TN10mRNA_15802
Organism: Heterodera glycines Gene Locus: chr8:5949244-5951649 Feature type: polypeptideProtein Sequence
Length: 401
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.131 | 0.812 | 0.771 | 0.602 | 1.039 | 1.663 | 0.683 | 1.122 | 1.219 | 1.483 | 0.453 | 1.32 | 1.247 | 0.671 | 1.374 | 0.998 | 0.94 | 1.058 | 1.726 | 0.513 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14933
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
0.988
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — |
1-21
|
0.990
|
— | — | — | — |
0.000
|
— | — |
0.304
|
0.199
|
0.016
|
0.640
|
0.325
|
0.381
|
0.251
|
0.002
|
0.391
|
0.113
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012078
|
1.000
|
1.000
|
Hsc_gene_6251.t3
|
Hsc_gene_6251.t1;Hsc_gene_6251.t2;Hsc_gene_6251.t3
|
— |
Q93646.1 Syntrophin-1 [Caenorhabditis elegans]
|
KAI1708179.1 PDZ domain (Also known as DHR or GLGF) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005198|GO:0005515
|
GO:0005575_0.893|GO:0110165_0.883|GO:0008150_0.712|GO:0016020_0.604|GO:0003674_0.585|GO:0071944_0.572|GO:0005886_0.561|GO:0009987_0.557
|
IPR001478+5-75_19-75_20-72+|IPR001849+60-173_190-300_191-302_192-298+|IPR011993+84-172+|IPR015482+20-397+|IPR036034+15-83_20-77+|IPR041428+114-168+
|
SM00228+5-75+|SM00233+60-173_191-302+
|
PF00169+192-298+PH_domain|PF00595+20-72+PDZ_domain|PF18012+114-168+PH_domain|PF23012+305-397+Syntrophin_C-terminal_PH_domain
|
— |
PTHR10554+20-397+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-401
|
1z87_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.553
|
44942.460
|
6.758
|
1.500
|
22.444
|
10.723
|
45.137
|
54.863
|
11.970
|
10.474
|
48.130
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
1182.071
|
1730.412
|
2273.825
|
1495.544
|
1163.076
|
1154.155
|
1104.045
|
2175.269
|
377.304
|
727.461
|
577.394
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.165
|
-0.348
|
-0.496
|
-0.395
|
— | — |
0.809
|
-0.835
|
— | — | — | — | — |
No JSON data available for plots.