Hg_chrom8_TN10mRNA_15804
Organism: Heterodera glycines Gene Locus: chr8:5953024-5955933 Feature type: polypeptideProtein Sequence
Length: 423
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.66 | 1.045 | 1.418 | 1.956 | 2.364 | 1.273 | 0.563 | 1.182 | 0.63 | 0.831 | 1.433 | 2.086 | 1.116 | 0.546 | 0.82 | 0.979 | 0.62 | 0.466 | 0.727 | 0.765 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14935
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-Not_Clustered
|
0.692
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.909
|
0.097
|
0.004
|
0.383
|
0.051
|
0.054
|
0.119
|
0.003
|
0.020
|
0.087
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012080
|
1.000
|
1.000
|
Hsc_gene_6253.t1
|
Hsc_gene_6253.t1
|
— |
Q8N806.2 Putative E3 ubiquitin-protein ligase UBR7 [Homo sapiens]
|
KAI1715082.1 putative E3 ubiquitin-protein ligase [Ditylenchus destructor]
|
No
|
-0.170
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008270|GO:0061630
|
GO:0005575_0.915|GO:0110165_0.915|GO:0005622_0.877|GO:0043226_0.807|GO:0016020_0.799|GO:0043229_0.774|GO:0005737_0.764|GO:0043227_0.746|GO:0043231_0.704|GO:0005634_0.696|GO:0005829_0.640
|
IPR003126+80-150_80-151_82-147+|IPR011011+158-239+|IPR013083+163-237+|IPR040204+33-401+|IPR047506+82-150+
|
SM00396+80-150+
|
PF02207+82-147+Putative_zinc_finger_in_N-recognin_(UBR_box)
|
— |
PTHR13513+33-401+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-61;390-423
|
1.000
|
62-389
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.910
|
48804.220
|
4.446
|
-31.000
|
37.825
|
9.929
|
57.920
|
42.080
|
15.839
|
21.986
|
44.917
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
tan
|
1635.605
|
979.966
|
1599.661
|
1543.749
|
1704.103
|
1945.888
|
1707.360
|
1626.233
|
3398.293
|
441.944
|
1708.951
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.478
|
0.519
|
— |
0.111
|
0.206
|
-0.178
|
-0.362
|
0.213
|
2.829
|
— |
2.530
|
— | — |
No JSON data available for plots.