SCN Proteipedia

Hg_chrom8_TN10mRNA_15805

Organism: Heterodera glycines Gene Locus: chr8:5956379-5963360 Feature type: polypeptide

Protein Sequence

Length: 1,604

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.66	1.087	1.156	0.752	1.236	1.151	0.512	0.966	1.247	1.306	0.878	1.32	1.645	0.839	1.641	0.846	0.726	1.011	0.623	1.027	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_14936	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	14-Not_Clustered	0.608

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	nucleus	—	KRQLVIRFPFVDRQKRE	—	—	—	—	—	—	0.000	—	—	0.576	0.267	0.015	0.474	0.168	0.308	0.065	0.037	0.194	0.083

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002502	1.000	3.000	Hsc_gene_14736.t1;Hsc_gene_6254.t1;Hsc_gene_7055.t1	Hsc_gene_14736.t1;Hsc_gene_6254.t1;Hsc_gene_6255.t1;Hsc_gene_7054.t1;Hsc_gene_7054.t2;Hsc_gene_7055.t1	—	Q9LQV2.1 RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]	KAI1732698.1 RNA dependent RNA polymerase domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003968	GO:0008150_0.956\|GO:0009987_0.907\|GO:0065007_0.828\|GO:0008152_0.811\|GO:0050789_0.810\|GO:0050794_0.790\|GO:0044237_0.783\|GO:0009058_0.774\|GO:0043170_0.769\|GO:0044249_0.754\|GO:0009059_0.734\|GO:0019222_0.722\|GO:0010467_0.721\|GO:0048519_0.721\|GO:0031323_0.713\|GO:0048523_0.711\|GO:0060255_0.711\|GO:0009889_0.700\|GO:0031326_0.700\|GO:0010468_0.699\|GO:0010556_0.699\|GO:0009892_0.687\|GO:0010605_0.686\|GO:0031324_0.685\|GO:0009890_0.680\|GO:0010558_0.680\|GO:0031327_0.680\|GO:0010629_0.677\|GO:0031047_0.670\|GO:0044238_0.659\|GO:0005575_0.651\|GO:0110165_0.649\|GO:0005622_0.602\|GO:0006139_0.588\|GO:0010608_0.575\|GO:0016441_0.570\|GO:0090304_0.570\|GO:0016020_0.569\|GO:0034654_0.569\|GO:0141187_0.561\|GO:0016070_0.557\|GO:0032774_0.554\|GO:0050896_0.540\|GO:0043226_0.538\|GO:0043229_0.519	IPR007855+197-1279_470-1084+	—	PF05183+470-1084+RNA_dependent_RNA_polymerase	—	PTHR23079+197-1279+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1025-1072	2.000	1-1024;1073-1604	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.596	186082.990	7.502	16.500	29.551	12.157	49.065	50.935	15.773	13.778	44.576

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	turquoise	2879.738	3416.542	3571.335	3064.946	2909.297	2750.855	3446.510	2301.633	2414.668	2739.934	2600.534

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.166	-0.294	-0.112	-0.107	—	0.335	-0.362	0.725	—	—	—	—	—

No JSON data available for plots.

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