Hg_chrom8_TN10mRNA_15806
Organism: Heterodera glycines Gene Locus: chr8:5963822-5964835 Feature type: polypeptideProtein Sequence
Length: 132
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.969 | 1.233 | 0.275 | 0.261 | 1.263 | 0.971 | 0.18 | 1.515 | 2.02 | 0.819 | 1.263 | 1.783 | 2.104 | 0.728 | 2.474 | 0.649 | 1.118 | 0.574 | 1.166 | 0.446 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14937
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKRFFFSFSRPAIHIMKKK,KRFFFSFSRPAIHIMKKKI,RKRYRPGEKALKEIRRYQK,MKKKINKKEEQRRKRYRPGEKALKEIRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.717
|
0.304
|
0.097
|
0.441
|
0.092
|
0.013
|
0.019
|
0.001
|
0.054
|
0.062
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004778
|
1.000
|
2.000
|
Hsc_gene_6256.t1;Hsc_gene_6256.t2
|
Hsc_gene_6256.t1;Hsc_gene_6256.t2
|
— |
P90543.3 Histone H3 [Moneuplotes crassus]
|
KAI1706394.1 core histone h2A/H2B/H3/H4 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000786|GO:0003677|GO:0030527|GO:0046982
|
GO:0005575_0.891|GO:0110165_0.881|GO:0005622_0.812|GO:0043226_0.794|GO:0016020_0.782|GO:0043229_0.778|GO:0043227_0.692|GO:0043231_0.686|GO:0008150_0.566|GO:0009987_0.517|GO:0005634_0.505
|
IPR000164+23-121_25-46_25-128_49-66_90-106_106-127+|IPR007125+17-121+|IPR009072+11-126_19-123+
|
SM00428+25-128+
|
PF00125+17-121+Core_histone_H2A/H2B/H3/H4
|
— |
PTHR45810+23-121+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-132
|
4x23_O
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.869
|
15807.480
|
11.567
|
17.000
|
32.576
|
13.636
|
53.030
|
46.970
|
23.485
|
9.091
|
36.364
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
220.323
|
211.355
|
138.557
|
189.629
|
299.878
|
229.629
|
283.895
|
185.787
|
140.328
|
281.642
|
221.079
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.839
|
-0.294
|
0.561
|
0.629
|
-0.370
|
0.318
|
-0.411
|
0.756
|
— | — | — | — | — |
No JSON data available for plots.