Hg_chrom8_TN10mRNA_15809
Organism: Heterodera glycines Gene Locus: chr8:5973301-5975667 Feature type: polypeptideProtein Sequence
Length: 342
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.02 | 1.224 | 1.063 | 1.412 | 0.926 | 1.2 | 0.766 | 0.439 | 1.17 | 1.304 | 0.797 | 1.032 | 1.381 | 0.956 | 0.835 | 0.961 | 0.959 | 1.196 | 0.9 | 0.258 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14940
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm
|
— | — |
52-106
|
0.902
|
— | — | — | — |
0.000
|
— | — |
0.357
|
0.485
|
0.018
|
0.699
|
0.318
|
0.149
|
0.245
|
0.221
|
0.044
|
0.116
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012083
|
1.000
|
1.000
|
Hsc_gene_6259.t1
|
Hsc_gene_6259.t1
|
— |
A8PW87.1 Cytosolic Fe-S cluster assembly factor NUBP1 homolog [Brugia malayi]
|
KAI1702100.1 NUBPL iron-transfer p-loop NTPase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005524|GO:0016226|GO:0051536|GO:0051539|GO:0140663
|
GO:0005575_0.801|GO:0110165_0.797|GO:0005622_0.688|GO:0008150_0.644|GO:0016020_0.606|GO:0005737_0.593|GO:0009987_0.587|GO:0003674_0.512
|
IPR000808+182-198+|IPR019591+12-333_51-325_58-296+|IPR027417+42-306_52-340+|IPR028601+5-329+|IPR033756+56-85_107-324+
|
— |
PF10609+56-85_107-324+NUBPL_iron-transfer_P-loop_NTPase
|
G3DSA:3.40.50.300:FF:001119+52-330+Iron-sulfur_cluster_carrier_protein
|
PTHR23264+12-333+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-13;339-342
|
1.000
|
14-338
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.599
|
37260.710
|
4.943
|
-5.500
|
21.637
|
7.895
|
44.152
|
55.848
|
10.234
|
11.404
|
55.848
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
1467.024
|
2824.144
|
1526.273
|
1384.610
|
1501.895
|
1294.902
|
1422.126
|
1507.344
|
806.965
|
1515.021
|
1211.569
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.118
|
-1.166
|
— | — |
-0.199
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.