Hg_chrom8_TN10mRNA_15811
Organism: Heterodera glycines Gene Locus: chr8:5976809-5977689 Feature type: polypeptideProtein Sequence
Length: 197
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.062 | 0.354 | 1.569 | 0.525 | 1.184 | 1.302 | 0.544 | 1.015 | 1.128 | 0.686 | 0.923 | 2.389 | 1.551 | 1.074 | 2.175 | 0.725 | 0.583 | 1.077 | 0.781 | 0.448 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14942
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
25-45
|
0.993
|
— | — | — | — |
0.000
|
— | — |
0.144
|
0.923
|
0.050
|
0.211
|
0.019
|
0.049
|
0.061
|
0.007
|
0.034
|
0.088
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012085
|
1.000
|
1.000
|
Hsc_gene_6261.t1
|
Hsc_gene_6261.t1
|
— | — |
KAF7629856.1 SHSP domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.826|GO:0008150_0.826|GO:0110165_0.813|GO:0005622_0.767|GO:0005737_0.667|GO:0003674_0.597|GO:0050896_0.596|GO:0006950_0.555|GO:0009987_0.554|GO:0005488_0.527
|
IPR001436+35-47_89-186_93-113_115-128_151-172_181-196+|IPR002068+81-189_94-186+|IPR008978+79-197_94-186+
|
— |
PF00011+94-186+Hsp20/alpha_crystallin_family
|
— |
PTHR45640+89-186+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
172-197
|
1.000
|
1-171
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.570
|
22702.930
|
8.280
|
4.000
|
34.518
|
10.152
|
49.746
|
50.254
|
18.782
|
15.736
|
46.701
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
greenyellow
|
1825.896
|
6455.391
|
2086.568
|
1185.182
|
1738.644
|
1350.900
|
1826.762
|
1689.332
|
1147.638
|
1002.776
|
1064.860
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.860
|
-2.583
|
-0.707
|
0.520
|
-0.350
|
0.445
|
— | — | — | — | — | — | — |
No JSON data available for plots.