Hg_chrom8_TN10mRNA_15812
Organism: Heterodera glycines Gene Locus: chr8:5982477-5983357 Feature type: polypeptideProtein Sequence
Length: 190
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.428 | 0.979 | 1.435 | 0.544 | 1.842 | 0.675 | 0.752 | 0.526 | 1.404 | 0.996 | 1.994 | 1.858 | 2.339 | 0.607 | 0.43 | 0.677 | 0.949 | 0.638 | 0.81 | 0.619 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14943
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.248
|
0.201
|
0.022
|
0.468
|
0.194
|
0.403
|
0.337
|
0.006
|
0.658
|
0.165
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003145
|
2.000
|
1.000
|
Hsc_gene_6263.t1
|
Hsc_gene_6263.t1
|
F10G8.5
|
P36609.2 Neuronal calcium sensor 2 [Caenorhabditis elegans]
|
XP_024504261.1 EF-hand domain and EF-hand domain pair-containing protein [Strongyloides ratti];CEF65060.1 EF-hand domain and EF-hand domain pair-containing protein [Strongyloides ratti]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509
|
GO:0008150_0.728|GO:0005575_0.716|GO:0110165_0.710|GO:0005622_0.598|GO:0003674_0.586|GO:0009987_0.584|GO:0005737_0.570
|
IPR002048+62-97_66-94_67-127_68-91_98-133_100-173_102-130_102-173_145-180_149-177+|IPR011992+6-184+|IPR018247+75-87_111-123_158-170+|IPR028846+8-185+
|
SM00054+66-94_102-130_149-177+
|
PF00036+68-91+EF_hand|PF13499+100-173+EF-hand_domain_pair
|
G3DSA:1.10.238.10:FF:000009+1-188+Visinin-like_protein_1
|
PTHR23055+8-185+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-190
|
5t7c_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.698
|
21985.110
|
4.818
|
-6.000
|
35.263
|
12.632
|
52.632
|
47.368
|
16.316
|
18.947
|
41.579
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1007.582
|
1062.201
|
1971.357
|
910.290
|
441.707
|
819.415
|
1704.391
|
2497.874
|
435.883
|
553.545
|
503.118
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.663
|
-0.360
|
-1.006
|
-1.076
|
0.906
|
1.068
|
1.510
|
-0.411
|
— | — | — | — | — |
No JSON data available for plots.