Hg_chrom8_TN10mRNA_15813
Organism: Heterodera glycines Gene Locus: chr8:5984256-5986338 Feature type: polypeptideProtein Sequence
Length: 382
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.005 | 1.035 | 1.142 | 0.812 | 0.611 | 1.41 | 0.873 | 1.047 | 1.222 | 0.814 | 0.952 | 2.156 | 1.309 | 1.208 | 0.588 | 1.122 | 1.073 | 0.793 | 1.812 | 0.693 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14944
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.840
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.002
|
— | — |
0.670
|
0.123
|
0.012
|
0.551
|
0.258
|
0.269
|
0.241
|
0.009
|
0.103
|
0.053
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012086
|
1.000
|
1.000
|
Hsc_gene_6264.t1
|
Hsc_gene_6264.t1
|
— |
Q93454.1 mRNA export factor rae-1 [Caenorhabditis elegans]
|
KAI1701936.1 mRNA export factor rae-1 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.821|GO:0110165_0.821|GO:0008150_0.798|GO:0005622_0.751|GO:0009987_0.725|GO:0043226_0.672|GO:0043229_0.654|GO:0016020_0.641|GO:0005737_0.569|GO:0043227_0.567|GO:0043231_0.560|GO:0065007_0.511
|
IPR001680+39-82_68-81_88-126_94-135_100-126_128-169_133-169_135-178_265-315_289-315_290-315+|IPR015943+25-382+|IPR019775+113-127_156-170+|IPR020472+69-83_156-170_302-316+|IPR036322+45-349+
|
SM00320+39-82_88-126_128-169_265-315+
|
PF00400+68-81_100-126_133-169_289-315+WD_domain,_G-beta_repeat
|
— |
PTHR10971+38-379+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-382
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.763
|
42043.760
|
6.678
|
1.000
|
21.204
|
11.518
|
45.550
|
54.450
|
11.257
|
9.948
|
54.974
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
midnightblue
|
1479.082
|
1907.642
|
1095.799
|
1398.753
|
1531.062
|
1058.122
|
1906.996
|
1147.652
|
915.123
|
2017.381
|
1544.985
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.030
|
-0.585
|
0.461
|
— |
-0.518
|
0.861
|
— |
0.876
|
— | — | — | — | — |
No JSON data available for plots.