Hg_chrom8_TN10mRNA_15817
Organism: Heterodera glycines Gene Locus: chr8:5995251-5996044 Feature type: polypeptideProtein Sequence
Length: 125
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.023 | 0.0 | 1.309 | 1.103 | 1.333 | 0.41 | 0.476 | 2.4 | 0.356 | 1.189 | 1.455 | 3.765 | 1.111 | 1.385 | 2.449 | 0.457 | 0.262 | 0.364 | 1.231 | 1.176 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14948
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
REKRLLMRKARKERAKAA
|
— | — | — | — | — | — |
0.000
|
— | — |
0.148
|
0.874
|
0.045
|
0.218
|
0.122
|
0.097
|
0.088
|
0.018
|
0.113
|
0.039
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
P90789.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 [Caenorhabditis elegans]
|
NP_492119.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 [Caenorhabditis elegans];P90789.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 [Caenorhabditis elegans];CAA98116.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 [Caenorhabditis elegans]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005739
|
GO:0005575_0.887|GO:0110165_0.887|GO:0005622_0.867|GO:0043226_0.808|GO:0043229_0.798|GO:0016020_0.788|GO:0043227_0.751|GO:0043231_0.740|GO:0005737_0.733|GO:0005739_0.573|GO:0032991_0.510
|
IPR008698+7-124_44-106+
|
— |
PF05676+44-106+NADH-ubiquinone_oxidoreductase_B18_subunit_(NDUFB7)
|
— |
PTHR20900+7-124+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
116-125
|
1.000
|
1-115
|
8esz_B7
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.620
|
14951.430
|
9.873
|
11.000
|
41.600
|
14.400
|
48.000
|
52.000
|
26.400
|
15.200
|
37.600
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.