Hg_chrom8_TN10mRNA_15818
Organism: Heterodera glycines Gene Locus: chr8:5997855-6000821 Feature type: polypeptideProtein Sequence
Length: 450
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.034 | 1.292 | 0.808 | 0.536 | 1.222 | 1.14 | 0.741 | 1.333 | 1.284 | 1.171 | 0.774 | 1.569 | 1.481 | 0.556 | 1.224 | 0.889 | 0.801 | 0.64 | 2.051 | 1.307 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14949
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — |
6-27
|
0.994
|
— | — | — | — |
0.000
|
— | — |
0.375
|
0.326
|
0.045
|
0.548
|
0.310
|
0.161
|
0.199
|
0.071
|
0.242
|
0.252
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012090
|
1.000
|
1.000
|
Hsc_gene_6268.t1
|
Hsc_gene_6268.t1
|
— |
P53624.2 Mannosyl-oligosaccharide alpha-1,2-mannosidase IA [Drosophila melanogaster]
|
KAF7639802.1 alpha-1,2-Mannosidase, partial [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004571|GO:0005509|GO:0005975|GO:0016020
|
GO:0008150_0.867|GO:0005575_0.857|GO:0110165_0.847|GO:0005622_0.769|GO:0003674_0.745|GO:0016020_0.736|GO:0005737_0.735|GO:0043226_0.701|GO:0008152_0.685|GO:0043229_0.685|GO:0071944_0.669|GO:0005886_0.665|GO:0044238_0.663|GO:0043227_0.658|GO:0043231_0.648|GO:0003824_0.635|GO:0043170_0.615|GO:0019538_0.596|GO:0016787_0.572|GO:0005773_0.567|GO:0012505_0.546|GO:0016798_0.534|GO:0004553_0.533|GO:0004559_0.527|GO:0015923_0.527|GO:0009987_0.523|GO:1901135_0.507
|
IPR001382+14-34_14-442_51-65_89-107_209-226_271-287_345-369_406-426+|IPR012341+1-450+|IPR036026+4-442+|IPR050749+3-442+
|
— |
PF01532+14-442+Glycosyl_hydrolase_family_47
|
G3DSA:1.50.10.10:FF:000017+1-447+alpha-1,2-Mannosidase
|
PTHR11742+3-442+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1
|
1.000
|
2-450
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.605
|
51737.670
|
6.915
|
3.000
|
25.556
|
15.111
|
46.667
|
53.333
|
13.778
|
11.778
|
44.889
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
grey
|
1131.110
|
577.631
|
1192.866
|
933.482
|
1128.539
|
1543.200
|
1291.944
|
1725.105
|
1001.794
|
1049.974
|
1029.326
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.818
|
0.556
|
-0.246
|
0.242
|
0.466
|
-0.248
|
— |
-0.276
|
— | — | — | — | — |
No JSON data available for plots.