Hg_chrom8_TN10mRNA_15819
Organism: Heterodera glycines Gene Locus: chr8:6000529-6003236 Feature type: polypeptideProtein Sequence
Length: 463
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.728 | 0.804 | 1.021 | 0.372 | 1.908 | 1.385 | 0.437 | 1.296 | 0.96 | 1.372 | 1.145 | 1.143 | 1.2 | 0.54 | 1.322 | 1.481 | 0.708 | 0.785 | 0.831 | 0.572 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14950
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.823
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|lysosome_vacuole|golgi_apparatus
|
— |
KRSR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.209
|
0.204
|
0.017
|
0.592
|
0.224
|
0.806
|
0.696
|
0.044
|
0.180
|
0.043
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012091
|
1.000
|
1.000
|
Hsc_gene_6269.t1
|
Hsc_gene_6269.t1
|
— |
Q9WV80.1 Sorting nexin-1 [Mus musculus]
|
KAF7639775.1 PX domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0035091
|
GO:0005575_0.932|GO:0110165_0.930|GO:0005622_0.848|GO:0016020_0.848|GO:0008150_0.839|GO:0043226_0.800|GO:0043229_0.786|GO:0009987_0.784|GO:0005737_0.754|GO:0043227_0.728|GO:0043231_0.708|GO:0005886_0.627|GO:0071944_0.627|GO:0005773_0.529|GO:0051179_0.526|GO:0012505_0.524|GO:0051234_0.516|GO:0006810_0.507|GO:0051641_0.503
|
IPR001683+83-208_83-212_119-207+|IPR015404+226-456+|IPR027267+242-460+|IPR036871+82-217_85-208+
|
SM00312+83-208+
|
PF00787+119-207+PX_domain|PF09325+226-456+Vps5_C_terminal_like
|
G3DSA:1.20.1270.60:FF:000022+241-460+Sorting_nexin_3_protein
|
PTHR10555+24-460+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-72;457-463
|
1.000
|
73-456
|
2i4k_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.587
|
53195.790
|
5.450
|
-8.000
|
33.693
|
9.935
|
57.235
|
42.765
|
16.631
|
17.063
|
42.765
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
1278.221
|
2464.259
|
994.541
|
997.307
|
1184.236
|
1999.086
|
2243.046
|
2282.312
|
943.790
|
322.580
|
588.813
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.538
|
-1.442
|
— |
0.216
|
0.770
|
0.178
|
— | — | — | — | — | — | — |
No JSON data available for plots.