SCN Proteipedia

Hg_chrom8_TN10mRNA_15821

Organism: Heterodera glycines Gene Locus: chr8:6007364-6010403 Feature type: polypeptide

Protein Sequence

Length: 587

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.565	0.634	0.372	0.587	0.312	3.495	1.075	1.704	0.946	0.506	0.723	1.203	0.804	1.278	0.73	1.144	1.676	0.8	0.262	0.1	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_14952	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	0.988

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RHRR	—	—	32-120	0.957	—	—	0.000	—	—	0.893	0.147	0.019	0.324	0.031	0.023	0.022	0.005	0.087	0.039

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012093	1.000	1.000	Hsc_gene_6272.t1	—	—	Q9XW26.3 Specificity protein transcription factor 3 [Caenorhabditis elegans]	KAI1712080.1 zinc-finger double domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	Yes	—	GO:0008150_0.908\|GO:0009987_0.762\|GO:0065007_0.759\|GO:0050789_0.754\|GO:0050794_0.693\|GO:0003674_0.677\|GO:0005488_0.670\|GO:0097159_0.670\|GO:0003676_0.664\|GO:0032502_0.639\|GO:0005575_0.638\|GO:0032501_0.637\|GO:0110165_0.626\|GO:0048856_0.624\|GO:0003677_0.607\|GO:0008152_0.596\|GO:0009058_0.596\|GO:0009059_0.596\|GO:0010467_0.596\|GO:0043170_0.596\|GO:0044237_0.596\|GO:0044249_0.596\|GO:0006139_0.590\|GO:0019222_0.590\|GO:0034654_0.590\|GO:0044238_0.590\|GO:0080090_0.590\|GO:0031323_0.588\|GO:0016070_0.587\|GO:0032774_0.587\|GO:0090304_0.587\|GO:0141187_0.587\|GO:0060255_0.579\|GO:0006351_0.574\|GO:0043226_0.574\|GO:0043565_0.574\|GO:0009889_0.571\|GO:0010556_0.571\|GO:0031326_0.571\|GO:0005622_0.569\|GO:0010468_0.567\|GO:0043229_0.562\|GO:0019219_0.561\|GO:0051252_0.561\|GO:0003690_0.560\|GO:2001141_0.554\|GO:0006355_0.551\|GO:1990837_0.542\|GO:0007275_0.536\|GO:0006366_0.535\|GO:0016020_0.526\|GO:0006357_0.525	IPR013087+471-493_471-498_473-493_499-523_499-528_501-523_529-551_529-556_531-551+\|IPR036236+468-519_504-551+	SM00355+471-493_499-523_529-551+	PF00096+499-523_531-551+Zinc_finger,_C2H2_type	G3DSA:3.30.160.60:FF:000018+494-524+Krueppel-like_factor_15\|G3DSA:3.30.160.60:FF:000100+525-552+Zinc_finger_45-like	PTHR23235+243-554+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-36;227-447;547-587	2.000	37-226;448-546	6vtx_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.882	61290.690	10.742	36.000	15.673	6.985	50.256	49.744	11.755	3.918	59.114

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey60	790.848	2305.997	1048.611	881.784	568.478	659.465	532.980	1056.093	513.925	429.487	465.675

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.365	-1.524	-0.142	-0.666	0.229	-0.298	0.580	-0.847	—	—	—	—	—

No JSON data available for plots.

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