SCN Proteipedia

Hg_chrom8_TN10mRNA_15822

Organism: Heterodera glycines Gene Locus: chr8:6011035-6013953 Feature type: polypeptide

Protein Sequence

Length: 506

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.195	1.011	0.719	0.409	0.988	1.064	0.988	1.383	0.791	1.229	0.689	2.093	1.482	1.178	1.291	1.27	0.616	0.689	0.456	0.814	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_14953	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-ppJ2	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	cell_membrane	—	RKRRR	44-64	1.000	40-80	1.000	—	—	0.000	—	—	0.339	0.052	0.050	0.331	0.452	0.354	0.440	0.100	0.563	0.129

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012094	1.000	1.000	Hsc_gene_6273.t1	Hsc_gene_6273.t1	—	O08835.2 Synaptotagmin-11 [Rattus norvegicus]	KAI1712081.1 c2 domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.883\|GO:0005575_0.848\|GO:0110165_0.848\|GO:0009987_0.825\|GO:0016020_0.758\|GO:0065007_0.741\|GO:0050789_0.726\|GO:0050794_0.661\|GO:0003674_0.653\|GO:0005622_0.648\|GO:0071840_0.633\|GO:0016043_0.631\|GO:0051179_0.625\|GO:0043226_0.618\|GO:0051234_0.616\|GO:0071944_0.616\|GO:0006810_0.615\|GO:0005488_0.594\|GO:0005886_0.590\|GO:0043229_0.583\|GO:0005737_0.575\|GO:0043227_0.574\|GO:0046903_0.558\|GO:0032940_0.556\|GO:0140352_0.556\|GO:0007154_0.547\|GO:0043231_0.542\|GO:0023052_0.541\|GO:0006996_0.515\|GO:0032879_0.502	IPR000008+222-347_242-346_243-340_361-501_377-500_378-481+\|IPR035892+222-347_224-345_350-504_358-485+	SM00239+242-346_377-500+	PF00168+243-340_378-481+C2_domain	—	PTHR10024+56-501+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-2;64-229	2.000	3-63;230-506	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.884	55522.090	8.651	12.000	23.518	11.462	44.664	55.336	13.636	9.881	51.383

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	darkturquoise	2089.350	2508.731	7896.017	4926.052	1150.114	426.930	172.971	3992.976	570.412	810.424	707.562

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.427	0.836	-0.574	-2.131	-1.416	-1.294	3.126	-4.389	—	3.287	—	—	—

No JSON data available for plots.

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