Hg_chrom8_TN10mRNA_15824
Organism: Heterodera glycines Gene Locus: chr8:6020280-6026028 Feature type: polypeptideProtein Sequence
Length: 863
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.617 | 0.647 | 0.611 | 0.559 | 0.734 | 1.337 | 0.897 | 1.68 | 0.566 | 1.206 | 0.176 | 1.5 | 1.32 | 1.827 | 1.23 | 1.473 | 0.608 | 1.001 | 0.357 | 0.375 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14955
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-Not_Clustered
|
0.491
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RHRR
|
— | — |
77-100
|
0.994
|
— | — |
0.000
|
— | — |
0.337
|
0.192
|
0.080
|
0.480
|
0.163
|
0.150
|
0.182
|
0.262
|
0.153
|
0.250
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012095
|
1.000
|
1.000
|
Hsc_gene_6276.t1
|
Hsc_gene_6276.t1
|
— |
Q9BJZ5.1 RNA-binding protein fusilli [Drosophila melanogaster]
|
KAI1701327.1 epithelial splicing regulatory protein 1 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723
|
GO:0008150_0.847|GO:0005575_0.601|GO:0110165_0.601|GO:0009987_0.564|GO:0003674_0.548|GO:0065007_0.521
|
IPR000504+307-379_410-495_411-491_577-656_578-655+|IPR012677+297-388_399-513_571-669+|IPR035979+301-387_414-645+|IPR050666+306-665+
|
SM00360+307-379_411-491_578-655+
|
— | — |
PTHR13976+306-665+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
855-863
|
1.000
|
1-854
|
7wrn_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.874
|
91091.200
|
7.104
|
9.500
|
18.308
|
9.849
|
40.324
|
59.676
|
10.545
|
7.764
|
59.328
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
darkgrey
|
1722.713
|
808.536
|
1038.418
|
1733.331
|
1756.509
|
1683.573
|
641.814
|
1175.664
|
1177.280
|
3339.715
|
2412.957
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.963
|
0.847
|
— | — |
-1.383
|
-0.625
|
-0.733
|
— | — | — | — | — |
No JSON data available for plots.