SCN Proteipedia

Hg_chrom8_TN10mRNA_15825

Organism: Heterodera glycines Gene Locus: chr8:6028235-6031360 Feature type: polypeptide

Protein Sequence

Length: 580

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.022	1.002	0.752	0.297	0.69	1.017	1.088	1.379	1.456	1.678	0.549	0.913	1.676	0.796	1.161	1.207	0.876	0.653	1.061	0.71	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_14956	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-ppJ2	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	KRRR,RSQKRGK,KKEQTDEERERRMERQKRR	30-50	0.997	23-52	1.000	—	—	0.000	—	—	0.084	0.139	0.217	0.116	0.310	0.549	0.331	0.009	0.649	0.066

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012096	1.000	1.000	Hsc_gene_6278.t1	Hsc_gene_6278.t1	—	P34410.3 TWiK family of potassium channels protein 7 [Caenorhabditis elegans]	KAI1706206.1 ion channel domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005267\|GO:0016020\|GO:0071805	GO:0008150_0.959\|GO:0009987_0.855\|GO:0003674_0.810\|GO:0051179_0.804\|GO:0051234_0.796\|GO:0006810_0.794\|GO:0005575_0.711\|GO:0110165_0.711\|GO:0055085_0.708\|GO:0006811_0.694\|GO:0006812_0.677\|GO:0030001_0.671\|GO:0034220_0.666\|GO:0016020_0.664\|GO:0005215_0.656\|GO:0022857_0.656\|GO:0098660_0.653\|GO:0006813_0.649\|GO:0098655_0.645\|GO:0098662_0.645\|GO:0015075_0.630\|GO:0015267_0.624\|GO:0022803_0.624\|GO:0008324_0.622\|GO:0071805_0.622\|GO:0005216_0.621\|GO:0015318_0.620\|GO:0022890_0.614\|GO:0046873_0.612\|GO:0005261_0.611\|GO:0071944_0.611\|GO:0005886_0.606\|GO:0005267_0.601\|GO:0015079_0.601	IPR003280+155-508_297-325_436-445+\|IPR013099+283-340_404-483+	—	PF07885+283-340_404-483+Ion_channel	—	PTHR11003+155-508+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	47-103	2.000	1-46;104-580	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.853	63646.900	8.984	14.000	20.345	12.586	42.414	57.586	12.069	8.276	49.483

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	grey	280.131	353.297	967.450	249.814	89.696	97.872	69.567	510.320	13.467	338.717	199.324

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.224	-0.637	-1.845	-1.508	—	-0.481	2.281	-2.733	-4.792	4.414	—	—	—

No JSON data available for plots.

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