Hg_chrom8_TN10mRNA_15826
Organism: Heterodera glycines Gene Locus: chr8:6031634-6037480 Feature type: polypeptideProtein Sequence
Length: 1,065
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.557 | 1.157 | 0.802 | 0.518 | 2.269 | 1.42 | 0.537 | 1.08 | 0.814 | 0.66 | 1.039 | 1.547 | 0.522 | 1.354 | 1.61 | 1.972 | 0.754 | 0.555 | 0.289 | 0.359 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14957
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.894
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
PKPS,KRSPSVSNYGPAKRVKF,KKREKKKRRKEKERKRQE,SRRGNSHSRHNSGSKSPTVRSRPKTVRSRSTARSRRSNYRSRHNSGSKSPMARSRLGNSRSRRSNYRSRHNSGSKSPMARSRLGNSRSRLGNSRSRLSNYRSRHNSGSKSPTARSRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.830
|
0.079
|
0.004
|
0.369
|
0.063
|
0.029
|
0.035
|
0.005
|
0.100
|
0.080
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004780
|
1.000
|
2.000
|
Hsc_gene_6279.t1;Hsc_gene_6279.t2
|
— | — | — | — |
KAJ8633757
|
inf
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0046872
|
— |
IPR000571+816-843+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-735;845-1065
|
1.000
|
736-844
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.752
|
120085.720
|
5.194
|
-23.500
|
34.930
|
5.634
|
63.850
|
36.150
|
16.901
|
18.028
|
49.296
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
1985.677
|
3827.872
|
1441.268
|
1427.387
|
1677.857
|
1473.669
|
2601.627
|
1143.850
|
2219.888
|
1924.846
|
2051.293
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.640
|
-1.560
|
0.096
|
0.201
|
— |
0.831
|
-0.469
|
1.327
|
— | — | — | — | — |
No JSON data available for plots.