Hg_chrom8_TN10mRNA_15829
Organism: Heterodera glycines Gene Locus: chr8:6049042-6049793 Feature type: polypeptideProtein Sequence
Length: 136
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.769 | 1.197 | 0.802 | 0.254 | 1.348 | 0.754 | 0.875 | 0.0 | 0.98 | 1.093 | 2.562 | 0.865 | 1.225 | 0.424 | 0.9 | 0.525 | 1.446 | 1.003 | 0.566 | 0.865 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14960
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KITPKGGKGGKGKKKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.557
|
0.191
|
0.025
|
0.597
|
0.231
|
0.072
|
0.133
|
0.001
|
0.081
|
0.035
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012097
|
1.000
|
1.000
|
Hsc_gene_6280.t1
|
Hsc_gene_6280.t1
|
— |
P47198.2 Large ribosomal subunit protein eL22 [Rattus norvegicus]
|
KAI3414064.1 60S ribosomal protein L22 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412
|
GO:0005575_0.930|GO:0110165_0.928|GO:0005622_0.909|GO:0043226_0.833|GO:0005737_0.827|GO:0043229_0.819|GO:0043228_0.673|GO:0043232_0.673|GO:0032991_0.626|GO:0005829_0.618|GO:0003674_0.578|GO:0005840_0.534|GO:0016020_0.533|GO:1990904_0.533|GO:0044391_0.514|GO:0015934_0.502
|
IPR002671+16-133_25-131+|IPR038526+16-135+
|
— |
PF01776+25-131+Ribosomal_L22e_protein_family
|
G3DSA:3.30.1360.210:FF:000001+14-135+60S_ribosomal_protein_L22_1
|
PTHR10064+16-133+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-12;133-136
|
1.000
|
13-132
|
9cai_CU
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.644
|
15378.830
|
10.457
|
12.000
|
33.824
|
8.088
|
54.412
|
45.588
|
21.324
|
12.500
|
45.588
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
sienna3
|
5499.626
|
2112.281
|
4540.193
|
7964.873
|
8084.324
|
6122.529
|
4117.324
|
2918.508
|
6284.771
|
5899.771
|
6064.771
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.875
|
1.778
|
0.919
|
— |
-0.386
|
-0.562
|
-1.177
|
0.641
|
— | — | — | — | — |
No JSON data available for plots.