Hg_chrom8_TN10mRNA_15831
Organism: Heterodera glycines Gene Locus: chr8:6050950-6052527 Feature type: polypeptideProtein Sequence
Length: 257
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.995 | 1.357 | 1.839 | 0.671 | 2.27 | 0.798 | 0.695 | 0.195 | 0.865 | 1.683 | 1.061 | 0.687 | 0.432 | 0.673 | 0.715 | 0.945 | 1.021 | 0.413 | 0.0 | 0.572 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14962
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRKL,RKRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.870
|
0.166
|
0.006
|
0.375
|
0.110
|
0.025
|
0.062
|
0.003
|
0.073
|
0.105
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012099
|
1.000
|
1.000
|
Hsc_gene_6282.t1
|
Hsc_gene_6282.t1
|
— |
P51122.2 Acidic leucine-rich nuclear phosphoprotein 32 family member A [Bos taurus]
|
KAI1701796.1 leucine-rich repeat domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.862|GO:0110165_0.857|GO:0005622_0.730|GO:0043226_0.657|GO:0008150_0.632|GO:0043229_0.630|GO:0016020_0.618|GO:0009987_0.582|GO:0003674_0.551|GO:0005488_0.541|GO:0043227_0.526|GO:0043231_0.502
|
IPR003603+124-142+|IPR032675+1-160+|IPR045081+4-240+
|
SM00446+124-142+
|
PF14580+22-146+Leucine-rich_repeat
|
G3DSA:3.80.10.10:FF:000131+1-157+acidic_leucine-rich_nuclear_phosphoprotein_32-related_protein-like
|
PTHR11375+4-240+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-6;145-257
|
1.000
|
7-144
|
6xzr_GP1
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.974
|
28267.980
|
3.951
|
-33.500
|
34.630
|
3.891
|
56.420
|
43.580
|
10.895
|
23.735
|
51.362
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
yellow
|
3963.905
|
4468.325
|
3406.730
|
6269.957
|
6606.025
|
5165.962
|
3659.876
|
3344.215
|
2513.423
|
3111.607
|
2855.242
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.621
|
0.352
|
0.989
|
— |
-0.339
|
-0.487
|
-0.730
|
0.272
|
— |
1.486
|
— | — | — |
No JSON data available for plots.