SCN Proteipedia

Hg_chrom8_TN10mRNA_15832

Organism: Heterodera glycines Gene Locus: chr8:6053136-6056216 Feature type: polypeptide

Protein Sequence

Length: 544

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.834	0.769	0.802	0.38	0.888	1.367	1.444	0.827	1.144	0.795	0.641	1.946	1.174	1.414	1.576	1.103	0.693	0.975	0.566	0.757	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_14963	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Not_Clustered	0.935

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	FKRR,SRSRSRSPIRRGGDRFRSDRG	5-25	0.999	—	—	—	—	0.000	—	—	0.795	0.082	0.004	0.227	0.145	0.060	0.038	0.001	0.051	0.262

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012100	1.000	1.000	Hsc_gene_6283.t1	Hsc_gene_6283.t1	—	Q9P2K5.3 Myelin expression factor 2 [Homo sapiens]	KAH7721986.1 Protein C25A1.4 [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003676\|GO:0003723	GO:0005575_0.920\|GO:0110165_0.914\|GO:0008150_0.810\|GO:0003674_0.761\|GO:0009987_0.758\|GO:0043226_0.733\|GO:0005622_0.707\|GO:0005488_0.698\|GO:0043229_0.652\|GO:0016020_0.638\|GO:0097159_0.637\|GO:0003676_0.614\|GO:0065007_0.544\|GO:0043227_0.536\|GO:0050789_0.527\|GO:0043231_0.523\|GO:0050794_0.517\|GO:0008152_0.504	IPR000504+50-128_51-124_52-121_192-269_193-265_194-262_475-544_476-542_477-539+\|IPR012677+46-129_183-268_457-544+\|IPR035979+12-123_192-543+\|IPR050374+9-125+	SM00360+51-124_193-265_476-542+	PF00076+52-121_194-262_477-539+RNA_recognition_motif	—	PTHR23003+9-125+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	298-472	2.000	1-297;473-544	2do0_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.957	59095.050	9.665	16.500	23.346	9.191	43.934	56.066	13.603	9.743	53.860

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	darkturquoise	2140.085	3092.247	3043.496	2282.370	1917.379	1713.678	2021.917	1666.060	2392.042	1667.412	1977.968

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.254	-0.575	-0.305	-0.283	-0.147	0.250	—	0.425	—	—	—	—	—

No JSON data available for plots.

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