Hg_chrom8_TN10mRNA_15833
Organism: Heterodera glycines Gene Locus: chr8:6056300-6057908 Feature type: polypeptideProtein Sequence
Length: 355
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.95 | 0.852 | 1.229 | 0.583 | 0.704 | 1.3 | 0.838 | 1.408 | 0.876 | 1.256 | 0.683 | 0.829 | 1.33 | 0.975 | 1.38 | 1.288 | 0.97 | 0.896 | 0.65 | 0.911 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14964
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-Not_Clustered
|
0.469
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
22-42
|
0.982
|
4-54
|
0.998
|
— | — |
0.000
|
— | — |
0.137
|
0.968
|
0.022
|
0.292
|
0.035
|
0.049
|
0.172
|
0.015
|
0.036
|
0.020
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012101
|
1.000
|
1.000
|
Hsc_gene_6284.t1
|
Hsc_gene_6284.t1
|
— |
Q6GR25.1 Protein phosphatase PTC7 homolog [Xenopus laevis]
|
KAF7639756.1 Protein phosphatase [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.794|GO:0110165_0.782|GO:0016020_0.698|GO:0005622_0.670|GO:0008150_0.662|GO:0005737_0.614|GO:0043226_0.610|GO:0009987_0.595|GO:0043229_0.595|GO:0043227_0.572|GO:0043231_0.561
|
IPR001932+89-352_95-354_106-354_112-354_181-218+|IPR036457+97-354_106-352+|IPR039123+96-353+
|
SM00331+112-354+|SM00332+89-352+
|
PF00481+181-218+Protein_phosphatase_2C
|
— |
PTHR12320+96-353+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-355
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.788
|
39353.320
|
7.731
|
6.000
|
25.070
|
11.549
|
48.732
|
51.268
|
14.085
|
10.986
|
53.239
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
steelblue
|
791.186
|
682.365
|
547.295
|
588.804
|
817.910
|
1127.250
|
906.333
|
1068.422
|
296.567
|
1087.119
|
748.311
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.547
|
-0.350
|
0.214
|
0.442
|
0.477
|
-0.304
|
— | — | — | — | — | — | — |
No JSON data available for plots.