Hg_chrom8_TN10mRNA_15834
Organism: Heterodera glycines Gene Locus: chr8:6058196-6059321 Feature type: polypeptideProtein Sequence
Length: 301
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.502 | 1.004 | 1.087 | 0.344 | 1.163 | 1.107 | 0.633 | 0.831 | 0.96 | 1.437 | 1.862 | 1.759 | 1.661 | 0.575 | 1.356 | 1.044 | 0.654 | 1.158 | 0.0 | 0.391 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14965
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
21-pJ2_J3
|
0.983
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKRP,RKPQEVQKSAKKNVK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.882
|
0.027
|
0.014
|
0.212
|
0.055
|
0.012
|
0.010
|
0.006
|
0.042
|
0.014
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012102
|
1.000
|
1.000
|
Hsc_gene_6285.t1
|
Hsc_gene_6285.t1
|
— |
Q9N3F0.1 Ribosome production factor 2 homolog [Caenorhabditis elegans]
|
KAF7633438.1 Brix domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000027|GO:0000470|GO:0006364|GO:0019843
|
GO:0005575_0.930|GO:0110165_0.930|GO:0005622_0.896|GO:0043226_0.860|GO:0016020_0.859|GO:0043229_0.854|GO:0043227_0.796|GO:0043231_0.787|GO:0008150_0.772|GO:0009987_0.729|GO:0043228_0.700|GO:0043232_0.700|GO:0005634_0.680|GO:0031974_0.612|GO:0043233_0.612|GO:0070013_0.612|GO:0031981_0.606|GO:0005730_0.578|GO:0003674_0.556|GO:0005488_0.528
|
IPR007109+27-233_30-227_34-225+|IPR039770+1-291+
|
SM00879+30-227+
|
PF04427+34-225+Brix_domain
|
— |
PTHR12728+1-291+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
271-301
|
1.000
|
1-270
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.618
|
34506.120
|
10.434
|
20.500
|
33.555
|
8.970
|
53.488
|
46.512
|
20.598
|
12.957
|
42.857
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
yellow
|
1291.462
|
909.851
|
1063.059
|
1365.615
|
1318.560
|
976.346
|
1233.977
|
1020.545
|
1617.103
|
1479.335
|
1538.378
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.449
|
0.470
|
— |
-0.419
|
0.347
|
— |
0.416
|
— | — | — | — | — |
No JSON data available for plots.