SCN Proteipedia

Hg_chrom8_TN10mRNA_15836

Organism: Heterodera glycines Gene Locus: chr8:6060684-6065429 Feature type: polypeptide

Protein Sequence

Length: 949

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.311	1.176	0.651	0.727	0.755	2.243	0.878	1.791	0.679	1.296	0.463	1.612	0.907	1.033	0.839	1.159	1.175	0.798	0.486	0.403	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_14967	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Eggs_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal\|nuclear_export_signal	cytoplasm\|nucleus	—	RKVNSEPNLKMRIRAR	—	—	—	—	—	—	0.000	—	—	0.681	0.153	0.005	0.653	0.059	0.110	0.075	0.131	0.118	0.028

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002503	1.000	3.000	Hsc_gene_6287.t1;Hsc_gene_6291.t1;Hsc_gene_6291.t2	Hsc_gene_6287.t1;Hsc_gene_6291.t1;Hsc_gene_6291.t2	—	Q613L4.1 Histone deacetylase 4 [Caenorhabditis briggsae]	KAF7639704.1 Hist_deacetyl domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.943\|GO:0009987_0.860\|GO:0003674_0.846\|GO:0005575_0.840\|GO:0065007_0.833\|GO:0110165_0.833\|GO:0050789_0.801\|GO:0050794_0.765\|GO:0008152_0.742\|GO:0005622_0.726\|GO:0016020_0.722\|GO:0044237_0.682\|GO:0005488_0.681\|GO:0043226_0.679\|GO:0019222_0.668\|GO:0032501_0.657\|GO:0043229_0.651\|GO:0043170_0.650\|GO:0031323_0.649\|GO:0050896_0.637\|GO:0009058_0.629\|GO:0060255_0.615\|GO:0043227_0.611\|GO:0044238_0.606\|GO:0032502_0.597\|GO:0048856_0.597\|GO:0009889_0.588\|GO:0043231_0.586\|GO:0048519_0.586\|GO:0003824_0.576\|GO:0044249_0.573\|GO:0048523_0.567\|GO:0009059_0.563\|GO:0005515_0.559\|GO:0031326_0.554\|GO:0010467_0.553\|GO:0010556_0.552\|GO:0010468_0.551\|GO:0080090_0.546\|GO:0016787_0.542\|GO:0007275_0.536\|GO:0005737_0.519\|GO:0048731_0.512\|GO:0016043_0.508\|GO:0071840_0.508\|GO:0005634_0.506\|GO:0009892_0.504\|GO:0031324_0.503\|GO:0010605_0.501	IPR000286+689-712_725-740_813-823+\|IPR023696+546-922+\|IPR023801+568-881+\|IPR037138+544-926+\|IPR050284+549-915+	—	PF00850+568-881+Histone_deacetylase_domain	—	PTHR10625+549-915+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-53;89-490	2.000	54-88;491-949	2vqw_G	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.754	102008.750	6.904	8.000	18.862	8.851	47.945	52.055	10.748	8.114	55.321

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	2888.131	7185.328	4213.451	2410.955	1882.143	2634.909	4157.381	2789.098	1892.600	1738.649	1804.628

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.999	-1.713	-0.697	-0.389	0.500	0.668	—	0.717	—	—	—	—	—

No JSON data available for plots.

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