Hg_chrom8_TN10mRNA_15840
Organism: Heterodera glycines Gene Locus: chr8:6110662-6116170 Feature type: polypeptideProtein Sequence
Length: 981
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.138 | 0.948 | 0.964 | 0.914 | 0.917 | 1.673 | 0.667 | 1.376 | 0.748 | 0.992 | 0.479 | 1.259 | 1.048 | 0.941 | 1.56 | 1.34 | 1.136 | 0.942 | 1.098 | 0.45 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14971
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KRIKRWKGLQQKLGGQRGK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.226
|
0.233
|
0.029
|
0.554
|
0.214
|
0.459
|
0.428
|
0.068
|
0.453
|
0.090
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012107
|
1.000
|
1.000
|
Hsc_gene_6299.t1
|
Hsc_gene_6299.t1
|
— |
Q9N2V9.1 Probable 3',5'-cyclic phosphodiesterase pde-6 [Caenorhabditis elegans]
|
KAF7629988.1 Phosphodiesterase [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004114|GO:0007165|GO:0008081
|
GO:0008150_0.875|GO:0009987_0.829|GO:0065007_0.807|GO:0050789_0.788|GO:0005575_0.782|GO:0110165_0.778|GO:0050794_0.773|GO:0003674_0.673|GO:0005622_0.660|GO:0050896_0.655|GO:0051716_0.558|GO:0007154_0.549|GO:0023052_0.548|GO:0003824_0.504
|
IPR002073+641-966_716-943+|IPR003607+714-886_716-895+|IPR023088+712-725_743-756_757-772_784-800_868-881_885-901+|IPR023174+757-768+|IPR036971+638-969+
|
SM00471+714-886+
|
PF00233+716-943+3'5'-cyclic_nucleotide_phosphodiesterase
|
G3DSA:1.10.1300.10:FF:000020+639-968+Phosphodiesterase
|
PTHR11347+212-964+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-184;430-491;972-981
|
2.000
|
185-429;492-971
|
8yta_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.749
|
108504.650
|
7.461
|
13.500
|
24.363
|
9.480
|
51.274
|
48.726
|
13.558
|
10.805
|
54.842
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
tan
|
2215.513
|
2647.159
|
4056.633
|
1835.715
|
864.581
|
1549.829
|
1479.280
|
4222.544
|
3763.739
|
624.162
|
1969.695
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.387
|
-0.665
|
-1.036
|
-1.117
|
0.856
|
— |
1.344
|
-1.371
|
2.505
|
— | — | — | — |
No JSON data available for plots.