Hg_chrom8_TN10mRNA_15842
Organism: Heterodera glycines Gene Locus: chr8:6130535-6131139 Feature type: polypeptideProtein Sequence
Length: 118
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.591 | 0.394 | 0.924 | 1.169 | 1.271 | 1.956 | 0.605 | 2.542 | 1.318 | 1.718 | 0.257 | 0.997 | 1.648 | 1.793 | 1.038 | 1.574 | 0.139 | 0.642 | 0.0 | 0.249 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14973
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.699
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.557
|
0.216
|
0.007
|
0.592
|
0.143
|
0.266
|
0.154
|
0.003
|
0.084
|
0.283
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012108
|
1.000
|
1.000
|
Hsc_gene_6300.t4
|
Hsc_gene_6300.t1;Hsc_gene_6300.t4
|
— |
Q76LL6.1 FH1/FH2 domain-containing protein 3 [Mus musculus]
|
KAI3412018.1 Formin Homology 2 Domain containing [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.929|GO:0009987_0.879|GO:0005575_0.730|GO:0110165_0.727|GO:0005622_0.679|GO:0065007_0.678|GO:0050789_0.669|GO:0050794_0.664|GO:0016043_0.514|GO:0071840_0.514
|
IPR011989+15-118+|IPR041387+26-117+
|
— |
PF18382+26-117+Formin_N-terminal_GTPase-binding_domain
|
— |
PTHR45920+24-115+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
110-118
|
1.000
|
1-109
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.538
|
13192.000
|
5.090
|
-4.000
|
24.576
|
11.864
|
45.763
|
54.237
|
11.864
|
12.712
|
45.763
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
181.391
|
397.904
|
420.092
|
163.460
|
63.802
|
132.348
|
88.872
|
324.243
|
245.566
|
12.890
|
112.609
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.421
|
-1.253
|
-1.393
|
1.070
|
-0.565
|
1.192
|
-1.727
|
3.942
|
— | — | — | — |
No JSON data available for plots.