Hg_chrom8_TN10mRNA_15843
Organism: Heterodera glycines Gene Locus: chr8:6135774-6140926 Feature type: polypeptideProtein Sequence
Length: 1,407
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.859 | 0.595 | 0.737 | 0.123 | 2.452 | 1.185 | 0.626 | 0.711 | 0.474 | 0.624 | 1.411 | 0.962 | 0.671 | 1.025 | 1.784 | 1.868 | 1.002 | 0.603 | 0.437 | 0.502 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14974
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.983
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RKRKVEEEERKQKLK,RKRKLKEEEQRKKAL,KKDERGTTENERKQKG,RKAKKKAEEEERKRKLKE,KRRSLSEVRKGPAKKERRN,KKKEEAEERGSDAFQKRGK,KKEEAEERGSDAFQKRGKR,RKRKVEEETKRKVEEEKKR,KRKVEEETKRKVEEEKKRK,RKVEEETKRKVEEEKKRKE,KRKVEEEKKRKEEEEKKRK,RKVEEEKKRKEEEEKKRKA,KRKEEEEKKRKAGEERKMK,RKEEEEKKRKAGEERKMKE,KKRKAGEERKMKEEELRKR,KRKAGEERKMKEEELRKRK,RKAGEERKMKEEELRKRKV,RKQKLKQDEEERKAKKKAE,KRSKALEPKTVDEQKKRTF,RRRQREQQESEAERAKREK,RRQREQQESEAERAKREKE,KREKEERESKEREKREKEK,KKSAQAAQTAKTESKRTVR,KRPLTSPTDGTAPKAKKRG,TTEKKANRRKNRRRNTRHGHQRR
|
28-51
|
0.923
|
29-50
|
0.998
|
— | — |
0.000
|
— | — |
0.315
|
0.108
|
0.058
|
0.776
|
0.080
|
0.053
|
0.074
|
0.070
|
0.186
|
0.106
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004781
|
1.000
|
2.000
|
Hsc_gene_6301.t1;Hsc_gene_6301.t2
|
Hsc_gene_6301.t1;Hsc_gene_6301.t2
|
— | — |
KAH7717076.1 Protein C32E12.4 [Aphelenchus avenae]
|
No
|
-0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-1407
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.775
|
158345.740
|
6.558
|
0.000
|
38.237
|
6.112
|
64.606
|
35.394
|
19.474
|
18.763
|
48.117
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
steelblue
|
2022.913
|
5246.447
|
3852.397
|
1443.833
|
1058.660
|
2284.790
|
1987.079
|
4742.449
|
305.366
|
890.349
|
639.642
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.675
|
-1.999
|
-1.307
|
-0.479
|
1.123
|
— |
0.951
|
-1.112
|
— | — | — | — | — |
No JSON data available for plots.