SCN Proteipedia

Hg_chrom8_TN10mRNA_15846

Organism: Heterodera glycines Gene Locus: chr8:6146359-6149229 Feature type: polypeptide

Protein Sequence

Length: 353

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.659	1.054	1.082	0.488	1.653	1.235	0.405	0.85	1.763	1.225	0.687	1.666	1.338	0.599	1.677	0.809	0.743	0.901	0.654	1.5	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_14977	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	8-Eggs_J4_Males	0.998

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cell_membrane	—	KRINQEIERQLQRDKRNAR	66-89	0.989	—	—	—	—	0.000	—	—	0.190	0.144	0.007	0.441	0.050	0.487	0.429	0.013	0.641	0.071

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004782	2.000	1.000	Hsc_gene_6303.t1	Hsc_gene_6303.t1	M01D7.7a;M01D7.7c	P21279.4 Guanine nucleotide-binding protein G(q) subunit alpha [Mus musculus]	KAI3412011.1 Guanine nucleotide-binding protein subunit alpha-11 [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0001664\|GO:0003924\|GO:0007165\|GO:0007186\|GO:0019001\|GO:0031683	GO:0008150_0.871\|GO:0005575_0.854\|GO:0110165_0.854\|GO:0003674_0.786\|GO:0009987_0.782\|GO:0065007_0.753\|GO:0005886_0.740\|GO:0016020_0.740\|GO:0071944_0.740\|GO:0050896_0.719\|GO:0050789_0.712\|GO:0050794_0.689\|GO:0051716_0.680\|GO:0005488_0.654\|GO:0007154_0.653\|GO:0023052_0.652\|GO:0007165_0.633\|GO:0005622_0.543	IPR000654+3-17_75-85_253-263_291-301_305-316+\|IPR001019+6-352_13-342_13-352_32-353_34-347_35-50_166-188_195-212_217-245_263-272+\|IPR011025+61-180_62-179+\|IPR027417+32-347_35-341+	SM00275+13-352+	PF00503+13-342+G-protein_alpha_subunit	G3DSA:1.10.400.10:FF:000002+62-179+guanine_nucleotide-binding_protein_G(Q)_subunit_alpha\|G3DSA:3.40.50.300:FF:000692+29-85+Guanine_nucleotide-binding_protein_subunit_alpha\|G3DSA:3.40.50.300:FF:003977+167-353+Guanine_nucleotide-binding_protein_G(q)_subunit_alpha	PTHR10218+6-352+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-353	4qj5_A	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.718	41591.380	5.027	-8.000	30.312	12.465	49.858	50.142	14.448	15.864	40.227

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	turquoise	brown	2205.515	3321.578	2642.381	2277.053	2563.342	3348.575	2443.456	4271.105	1626.016	604.308	1042.183

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.559	-0.682	-0.106	0.139	0.401	-0.444	—	-0.661	1.331	—	2.325	—	—

No JSON data available for plots.

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