SCN Proteipedia

Hg_chrom8_TN10mRNA_15850

Organism: Heterodera glycines Gene Locus: chr8:6156958-6157531 Feature type: polypeptide

Protein Sequence

Length: 152

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.535	1.224	0.837	0.227	2.193	0.675	0.548	0.658	1.023	1.511	0.797	1.935	1.279	0.127	1.074	1.598	0.971	0.997	1.012	0.967	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_14980	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	6-pJ2_J3_J4_Male	0.986

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	RRIHGYVSVLQDERWRRL	—	—	—	—	—	—	0.000	—	—	0.415	0.123	0.009	0.564	0.222	0.247	0.264	0.003	0.180	0.121

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012112	1.000	1.000	Hsc_gene_6306.t1	—	—	—	KAF7629976.1 PH domain-containing protein [Meloidogyne graminicola]	No	0.040

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.932\|GO:0005575_0.925\|GO:0110165_0.914\|GO:0009987_0.879\|GO:0005622_0.858\|GO:0016020_0.833\|GO:0005737_0.816\|GO:0003674_0.808\|GO:0043226_0.799\|GO:0005488_0.786\|GO:0043229_0.786\|GO:0005515_0.779\|GO:0051179_0.772\|GO:0051234_0.768\|GO:0071840_0.766\|GO:0043227_0.764\|GO:0071944_0.763\|GO:0006810_0.760\|GO:0016043_0.759\|GO:0008152_0.750\|GO:0005886_0.743\|GO:0043231_0.738\|GO:0051641_0.738\|GO:0043170_0.732\|GO:0006996_0.719\|GO:0051649_0.719\|GO:0046907_0.699\|GO:0061024_0.698\|GO:0016192_0.695\|GO:0016050_0.684\|GO:0010256_0.682\|GO:0098657_0.680\|GO:0016197_0.679\|GO:0006897_0.677\|GO:0006900_0.677\|GO:0010324_0.677\|GO:0042802_0.677\|GO:0005829_0.676\|GO:0016482_0.676\|GO:0042147_0.676\|GO:0001881_0.670\|GO:0007032_0.670\|GO:0043112_0.670\|GO:0005773_0.659\|GO:0042803_0.659\|GO:0046983_0.659\|GO:0012505_0.635\|GO:0031982_0.600\|GO:0097708_0.575\|GO:0031410_0.574\|GO:0005794_0.562\|GO:0031984_0.556\|GO:0005768_0.553\|GO:0098791_0.550\|GO:0005802_0.548\|GO:0055037_0.546\|GO:0005769_0.545\|GO:0030135_0.540\|GO:0030136_0.540	IPR001849+18-115_19-117_30-114+\|IPR011993+13-116+	SM00233+19-117+	PF00169+30-114+PH_domain	—	—

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	124-152	1.000	1-123	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.801	17449.580	4.362	-10.000	29.605	10.526	54.605	45.395	11.842	17.763	44.079

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	turquoise	lightgreen	300.069	150.397	180.967	217.014	290.528	261.210	225.078	311.247	172.582	569.701	399.507

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	0.393	0.373	0.388	—	—	—	-0.325	—	—	—	—	—

No JSON data available for plots.

Back to Browser