Hg_chrom8_TN10mRNA_15851
Organism: Heterodera glycines Gene Locus: chr8:6157746-6158644 Feature type: polypeptideProtein Sequence
Length: 181
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.707 | 0.642 | 1.105 | 0.381 | 0.921 | 1.133 | 0.592 | 0.552 | 0.859 | 1.568 | 1.088 | 1.95 | 1.995 | 1.912 | 1.353 | 0.631 | 0.996 | 0.67 | 0.85 | 0.65 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14981
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
0.970
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.416
|
0.213
|
0.010
|
0.602
|
0.148
|
0.262
|
0.347
|
0.082
|
0.157
|
0.059
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012113
|
1.000
|
1.000
|
Hsc_gene_6307.t1
|
Hsc_gene_6307.t1
|
— |
Q9XWV3.1 Probable actin-related protein 2/3 complex subunit 3 [Caenorhabditis elegans]
|
KAI3412007.1 putative actin- protein 2/3 complex subunit 3 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005856|GO:0005885|GO:0030833|GO:0034314
|
GO:0005575_0.909|GO:0110165_0.905|GO:0005622_0.791|GO:0008150_0.760|GO:0009987_0.711|GO:0043226_0.678|GO:0043229_0.665|GO:0016020_0.599|GO:0005737_0.562
|
IPR007204+1-177_1-178+|IPR036753+1-181_3-177+
|
— |
PF04062+1-177+ARP2/3_complex_ARPC3_(21_kDa)_subunit
|
— |
PTHR12391+1-178+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-181
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.814
|
20731.100
|
9.422
|
5.000
|
26.519
|
11.602
|
44.199
|
55.801
|
14.917
|
11.602
|
45.856
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
yellow
|
950.591
|
1447.140
|
825.695
|
789.306
|
907.755
|
914.994
|
1185.871
|
1157.353
|
856.987
|
805.551
|
827.595
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.040
|
-1.012
|
— |
0.170
|
— |
0.385
|
0.235
|
0.178
|
— | — | — | — | — |
No JSON data available for plots.