Hg_chrom8_TN10mRNA_15853
Organism: Heterodera glycines Gene Locus: chr8:6159805-6161118 Feature type: polypeptideProtein Sequence
Length: 289
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.448 | 0.885 | 0.503 | 0.716 | 0.519 | 1.065 | 0.947 | 1.038 | 1.153 | 1.543 | 0.472 | 2.239 | 2.018 | 0.932 | 0.565 | 0.84 | 0.794 | 1.153 | 1.597 | 0.814 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14983
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cell_membrane
|
— | — |
5-65
|
0.771
|
— | — | — | — |
0.000
|
— | — |
0.059
|
0.250
|
0.018
|
0.188
|
0.335
|
0.465
|
0.231
|
0.017
|
0.618
|
0.139
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012115
|
1.000
|
1.000
|
Hsc_gene_6309.t1
|
Hsc_gene_6309.t1
|
— |
O43315.2 Aquaporin-9 [Homo sapiens]
|
KAI1719592.1 major intrinsic protein [Ditylenchus destructor]
|
No
|
-0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0015267|GO:0016020|GO:0055085
|
GO:0008150_0.911|GO:0005575_0.870|GO:0110165_0.867|GO:0009987_0.833|GO:0016020_0.789|GO:0071944_0.754|GO:0006810_0.739|GO:0051179_0.739|GO:0051234_0.739|GO:0005886_0.714|GO:0055085_0.708|GO:0003674_0.703|GO:0005215_0.575|GO:0022857_0.575|GO:0015850_0.549|GO:0015791_0.537|GO:0008643_0.524|GO:0034219_0.521|GO:0006833_0.516|GO:0042044_0.516
|
IPR000425+15-256_18-37_58-82_95-114_158-176_190-212_239-259+|IPR023271+14-263_16-260+|IPR050363+3-271+
|
— |
PF00230+15-256+Major_intrinsic_protein
|
— |
PTHR43829+3-271+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
288-289
|
1.000
|
1-287
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.705
|
31433.770
|
7.324
|
3.000
|
13.841
|
14.187
|
32.526
|
67.474
|
7.958
|
5.882
|
52.249
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.