Hg_chrom8_TN10mRNA_15854
Organism: Heterodera glycines Gene Locus: chr8:6161802-6163583 Feature type: polypeptideProtein Sequence
Length: 254
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.687 | 1.282 | 0.501 | 0.815 | 1.05 | 0.909 | 0.891 | 0.591 | 1.662 | 1.33 | 0.597 | 1.158 | 1.422 | 1.06 | 1.366 | 1.294 | 0.839 | 1.193 | 0.909 | 0.347 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14984
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — |
41-61
|
0.994
|
16-36
|
0.995
|
— | — |
0.000
|
— | — |
0.414
|
0.266
|
0.022
|
0.464
|
0.165
|
0.155
|
0.174
|
0.045
|
0.223
|
0.253
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002505
|
1.000
|
3.000
|
Hsc_gene_6298.t1;Hsc_gene_6311.t1;Hsc_gene_6311.t2
|
— | — | — |
NP_001191510.1 superoxide dismutase [Aplysia californica];AAM44291.1 superoxide dismutase [Aplysia californica]
|
No
|
0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006801|GO:0046872
|
GO:0008150_0.841|GO:0005575_0.767|GO:0110165_0.757|GO:0009987_0.727|GO:0003674_0.715|GO:0050896_0.691|GO:0005622_0.617|GO:0051716_0.614|GO:0016020_0.593|GO:0006950_0.590|GO:0005737_0.585|GO:0042221_0.584|GO:0008152_0.563|GO:0033554_0.561|GO:0070887_0.560|GO:0006979_0.545|GO:0044237_0.545|GO:0062197_0.545|GO:0034599_0.543|GO:0003824_0.517|GO:0043226_0.510
|
IPR001424+115-217_145-167_194-216+|IPR036423+102-254_107-250+
|
— |
PF00080+115-217+Copper/zinc_superoxide_dismutase_(SODC)
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-254
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.902
|
28013.360
|
8.499
|
5.500
|
20.866
|
8.661
|
44.094
|
55.906
|
11.811
|
9.055
|
51.575
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
midnightblue
|
872.728
|
1435.721
|
1208.543
|
619.333
|
487.991
|
468.192
|
329.862
|
957.712
|
1633.570
|
527.750
|
1001.673
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.479
|
-1.350
|
-0.855
|
-0.376
|
— |
-0.495
|
0.925
|
-1.395
|
— | — | — | — | — |
No JSON data available for plots.