SCN Proteipedia

Hg_chrom8_TN10mRNA_15855

Organism: Heterodera glycines Gene Locus: chr8:6164175-6171265 Feature type: polypeptide

Protein Sequence

Length: 1,124

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.755	0.662	0.906	0.644	0.964	1.095	0.773	1.512	1.542	1.407	0.741	1.256	1.73	0.924	1.253	0.877	1.05	1.011	1.3	0.523	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_14985	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	24-J3_Female	0.992

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	KRRP,RTKRKRR,KKLRESFYLGRHLRR,KRLISGDILLKLHRRWQR	—	—	—	—	—	—	0.000	—	—	0.054	0.117	0.013	0.172	0.321	0.457	0.289	0.007	0.840	0.020

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012116	1.000	1.000	Hsc_gene_6312.t1	Hsc_gene_6312.t1;Hsc_gene_6313.t1;Hsc_gene_6313.t2	—	P23348.1 Anion exchange protein 3 [Rattus norvegicus]	KAH7729480.1 anion exchange protein 3-like isoform 2 [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005452\|GO:0006820\|GO:0008509\|GO:0016020	GO:0008150_0.974\|GO:0009987_0.945\|GO:0006810_0.889\|GO:0051179_0.889\|GO:0051234_0.889\|GO:0005575_0.864\|GO:0110165_0.864\|GO:0003674_0.855\|GO:0016020_0.841\|GO:0055085_0.841\|GO:0005886_0.801\|GO:0071944_0.801\|GO:0006811_0.795\|GO:0034220_0.766\|GO:0005215_0.756\|GO:0022857_0.756\|GO:0098660_0.707\|GO:0015075_0.699\|GO:0015318_0.679\|GO:0065007_0.629\|GO:0015711_0.624\|GO:0022804_0.621\|GO:0015291_0.616\|GO:0022853_0.592\|GO:0008514_0.591\|GO:0015701_0.589\|GO:0015106_0.571	IPR001717+596-603_783-793_796-805_950-958_1091-1097+\|IPR003020+20-1107+\|IPR011531+530-1103+\|IPR013769+21-154_285-398+\|IPR016152+1-429_21-407+	—	PF00955+530-1103+HCO3-_transporter_integral_membrane_domain\|PF07565+21-154_285-398+Band_3_cytoplasmic_domain	G3DSA:1.10.287.570:FF:000001+541-582+Anion_exchange_protein	PTHR11453+20-1107+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	137-286;419-522	3.000	1-136;287-418;523-1124	8t47_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.648	126951.690	7.829	20.000	24.822	12.722	44.484	55.516	14.057	10.765	46.708

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	turquoise	1522.930	683.630	597.257	984.991	1662.414	2090.225	3311.914	934.899	91.506	2744.692	1607.612

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.425	0.390	0.832	0.724	0.344	0.675	-1.265	1.968	-5.031	—	—	—	—

No JSON data available for plots.

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