SCN Proteipedia

Hg_chrom8_TN10mRNA_15856

Organism: Heterodera glycines Gene Locus: chr8:6172553-6177823 Feature type: polypeptide

Protein Sequence

Length: 1,098

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.582	1.186	1.176	0.44	1.563	1.191	0.596	1.412	1.133	1.452	1.283	1.393	0.911	0.595	1.375	0.963	0.687	0.745	1.261	0.884	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_14986	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Egg	0.998

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	PAYKRRP,RKNDPFERVCSFIVNKRKY,GRRKRKKKNSAKKGRSLKKARVDGEMDNSEERKMKREGKERKPRKRKEKSGEEGK	—	—	—	—	—	—	0.000	—	—	0.971	0.030	0.073	0.127	0.040	0.031	0.030	0.002	0.039	0.008

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012117	1.000	1.000	Hsc_gene_6314.t2	Hsc_gene_6314.t1;Hsc_gene_6314.t2	—	B6ZLK2.1 Chromodomain-helicase-DNA-binding protein 1 [Gallus gallus]	KAH7722355.1 chromatin remodeling 5 [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005524\|GO:0140658	GO:0008150_0.865\|GO:0009987_0.825\|GO:0005575_0.824\|GO:0110165_0.824\|GO:0005622_0.762\|GO:0043226_0.727\|GO:0003674_0.722\|GO:0043229_0.707\|GO:0016020_0.697\|GO:0005488_0.679\|GO:0043227_0.630\|GO:0043231_0.598\|GO:0065007_0.570\|GO:0050789_0.551\|GO:0005634_0.544\|GO:0050794_0.516\|GO:0008152_0.505\|GO:0043170_0.505\|GO:0071840_0.502	IPR000330+242-521+\|IPR000953+22-109_23-116_139-202_141-209+\|IPR001650+547-660_550-701_576-660+\|IPR014001+235-436_251-422+\|IPR016197+23-114_121-199+\|IPR023779+70-90_166-186+\|IPR023780+66-99_142-198+\|IPR025260+950-1055+\|IPR027417+185-456_458-749_466-691+\|IPR038718+235-465+\|IPR049730+545-671+	SM00298+22-109_139-202+\|SM00487+235-436+\|SM00490+576-660+\|SM01176+950-1055+	PF00176+242-521+SNF2-related_domain\|PF00271+547-660+Helicase_conserved_C-terminal_domain\|PF00385+66-99_142-198+Chromo_(CHRromatin_Organisation_MOdifier)_domain	G3DSA:2.40.50.40:FF:000014+126-200+Chromodomain-helicase-DNA-binding_protein_2_isoform_1\|G3DSA:3.40.50.300:FF:000130+466-691+Chromodomain-helicase-DNA-binding_protein_2_isoform_1	PTHR45623+24-930+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-30;784-940;1050-1098	2.000	31-783;941-1049	3mwy_W	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.571	127518.750	6.995	8.500	33.880	10.747	54.554	45.446	18.033	15.847	41.803

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	tan	2604.049	3948.786	3138.645	2772.935	2708.413	2663.870	2464.480	2907.040	3054.497	1375.276	2094.943

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.561	-0.647	—	—	—	—	—	—	1.037	—	—	—	—

No JSON data available for plots.

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