Hg_chrom8_TN10mRNA_15859
Organism: Heterodera glycines Gene Locus: chr8:6202212-6208241 Feature type: polypeptideProtein Sequence
Length: 1,013
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.148 | 0.918 | 0.7 | 0.715 | 1.448 | 1.645 | 0.905 | 1.876 | 0.505 | 0.96 | 0.479 | 1.742 | 1.398 | 2.05 | 1.108 | 1.227 | 0.744 | 0.509 | 0.38 | 0.058 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14989
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.990
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRRR,RHRR
|
17-53
|
0.993
|
35-63
|
0.996
|
— | — |
0.006
|
— | — |
0.884
|
0.079
|
0.036
|
0.382
|
0.078
|
0.039
|
0.053
|
0.024
|
0.046
|
0.081
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004784
|
1.000
|
2.000
|
Hsc_gene_6319.t1;Hsc_gene_6319.t2
|
Hsc_gene_6319.t1;Hsc_gene_6319.t2
|
— |
G5EFF4.1 Spalt-like protein sem-4 [Caenorhabditis elegans]
|
KAI6178172.1 Zinc finger domain containing protein [Aphelenchoides besseyi];KAI6207582.1 Zinc finger domain containing protein [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.913|GO:0005575_0.897|GO:0065007_0.892|GO:0110165_0.892|GO:0009987_0.885|GO:0050789_0.885|GO:0050794_0.874|GO:0005622_0.836|GO:0008152_0.817|GO:0019222_0.817|GO:0031323_0.817|GO:0044237_0.817|GO:0044238_0.814|GO:0080090_0.814|GO:0043170_0.813|GO:0060255_0.813|GO:0043226_0.812|GO:0016020_0.806|GO:0009058_0.793|GO:0009059_0.793|GO:0009889_0.793|GO:0010556_0.793|GO:0031326_0.793|GO:0044249_0.793|GO:0010467_0.787|GO:0010468_0.787|GO:0043229_0.787|GO:0006139_0.780|GO:0016070_0.780|GO:0032774_0.780|GO:0034654_0.780|GO:0090304_0.780|GO:0141187_0.780|GO:0019219_0.777|GO:0051252_0.777|GO:0003674_0.769|GO:0005488_0.769|GO:0006351_0.766|GO:0006355_0.766|GO:2001141_0.766|GO:0032502_0.752|GO:0048856_0.726|GO:0032501_0.722|GO:0048519_0.705|GO:0043227_0.704|GO:0048523_0.684|GO:0006357_0.682|GO:0006366_0.682|GO:0043231_0.678|GO:0005634_0.669|GO:0007275_0.664|GO:0048731_0.646|GO:0007399_0.581|GO:0048518_0.576|GO:0048522_0.569|GO:0030154_0.542|GO:0048869_0.542|GO:0009892_0.541|GO:0048513_0.541|GO:0009890_0.535|GO:0010558_0.535|GO:0010605_0.535|GO:0031324_0.535|GO:0031327_0.535|GO:0045892_0.535|GO:0045934_0.535|GO:0051253_0.535|GO:1902679_0.535|GO:0000122_0.516
|
IPR013087+404-426_404-431_406-426_432-454_432-459_434-454_508-532_829-851_829-856_831-851_857-879_857-884_859-879+|IPR036236+403-454_829-879+|IPR051565+252-948+
|
SM00355+404-426_432-454_508-532_829-851_857-879+
|
PF00096+432-454_857-879+Zinc_finger,_C2H2_type
|
G3DSA:3.30.160.60:FF:000025+429-458+Spalt-like_transcription_factor_1|G3DSA:3.30.160.60:FF:000130+852-880+Spalt-like_transcription_factor_4|G3DSA:3.30.160.60:FF:002381+399-428+Putative_spalt_protein
|
PTHR23233+252-948+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
139-399;448-819;972-1013
|
3.000
|
1-138;400-447;820-971
|
7y3k_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.728
|
109866.410
|
5.433
|
-21.000
|
24.877
|
9.477
|
48.371
|
51.629
|
12.340
|
12.537
|
54.492
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1081.274
|
3216.791
|
2792.176
|
1495.015
|
875.857
|
503.790
|
551.355
|
1881.601
|
319.081
|
247.542
|
278.201
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.434
|
-1.243
|
-0.793
|
-0.803
|
-0.783
|
— |
1.800
|
-1.629
|
— | — | — | — | — |
No JSON data available for plots.