Hg_chrom8_TN10mRNA_15862
Organism: Heterodera glycines Gene Locus: chr8:6213885-6216868 Feature type: polypeptideProtein Sequence
Length: 569
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.083 | 0.777 | 0.735 | 0.667 | 1.435 | 0.766 | 0.46 | 1.23 | 1.094 | 1.496 | 0.825 | 2.068 | 1.562 | 0.98 | 1.112 | 0.854 | 0.749 | 0.825 | 1.487 | 1.292 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14992
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum|golgi_apparatus
|
— | — |
1-27
|
0.987
|
— | — | — | — |
0.000
|
— | — |
0.197
|
0.277
|
0.035
|
0.169
|
0.956
|
0.331
|
0.756
|
0.029
|
0.214
|
0.025
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012121
|
1.000
|
1.000
|
Hsc_gene_6322.t2
|
Hsc_gene_6322.t1;Hsc_gene_6322.t2
|
— |
A0M8U1.1 Suppressor of tumorigenicity 7 protein homolog [Gallus gallus]
|
KAI3411992.1 Suppressor of tumorigenicity 7 protein [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.957|GO:0009987_0.907|GO:0065007_0.837|GO:0050789_0.810|GO:0050794_0.785|GO:0071840_0.742|GO:0016043_0.741|GO:0048519_0.718|GO:0048523_0.707|GO:0040007_0.688|GO:0051128_0.687|GO:0016049_0.675|GO:0040008_0.675|GO:0001558_0.670|GO:0030308_0.670|GO:0045926_0.670
|
IPR007311+16-548_21-552_57-516+|IPR011990+190-445_206-330+
|
— |
PF04184+21-552+ST7_protein
|
— |
PTHR12745+16-548+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
568-569
|
1.000
|
1-567
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.572
|
65467.580
|
6.167
|
-3.000
|
26.011
|
14.411
|
42.882
|
57.118
|
13.357
|
12.654
|
43.585
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
1119.163
|
1992.864
|
1003.114
|
916.004
|
809.077
|
672.098
|
1270.872
|
803.695
|
809.674
|
1488.684
|
1197.680
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.220
|
-1.259
|
— |
-0.211
|
-0.253
|
0.929
|
— |
0.802
|
— | — | — | — | — |
No JSON data available for plots.