Hg_chrom8_TN10mRNA_15864
Organism: Heterodera glycines Gene Locus: chr8:6228076-6236077 Feature type: polypeptideProtein Sequence
Length: 715
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.073 | 1.334 | 0.559 | 0.723 | 0.816 | 2.08 | 1.016 | 1.049 | 0.653 | 1.21 | 0.466 | 1.481 | 0.932 | 1.318 | 0.885 | 1.299 | 1.399 | 0.869 | 0.215 | 0.165 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14994
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-Not_Clustered
|
0.804
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
PEDKRRQ
|
— | — | — | — | — | — |
0.000
|
— | — |
0.849
|
0.206
|
0.009
|
0.316
|
0.029
|
0.025
|
0.046
|
0.057
|
0.059
|
0.039
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004786
|
1.000
|
2.000
|
Hsc_gene_6324.t1;Hsc_gene_6324.t2
|
Hsc_gene_6324.t1;Hsc_gene_6324.t2
|
— | — |
KAH7729486.1 Protein DMD-7 a [Aphelenchus avenae]
|
No
|
0.220
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005634|GO:0006355|GO:0043565
|
— |
IPR001275+184-222_184-237_188-217_188-231+|IPR026607+139-596+|IPR036407+181-227_182-227+
|
SM00301+184-237+
|
PF00751+184-222+DM_DNA_binding_domain
|
— |
PTHR12322+139-596+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-44;85-180;311-358;408-500;581-715
|
4.000
|
45-84;181-310;359-407;501-580
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.876
|
75804.080
|
6.873
|
3.500
|
17.483
|
6.294
|
48.951
|
51.049
|
9.510
|
7.972
|
58.881
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
turquoise
|
1333.641
|
953.240
|
1148.714
|
840.859
|
1264.773
|
1738.445
|
1144.899
|
2291.241
|
287.214
|
2100.955
|
1323.637
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.318
|
-0.342
|
0.557
|
0.473
|
-0.592
|
0.296
|
-0.859
|
— | — | — | — | — |
No JSON data available for plots.