Hg_chrom8_TN10mRNA_15868
Organism: Heterodera glycines Gene Locus: chr8:6248739-6250866 Feature type: polypeptideProtein Sequence
Length: 381
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.916 | 0.977 | 0.954 | 0.815 | 0.787 | 0.942 | 1.344 | 1.444 | 1.458 | 1.064 | 0.557 | 2.625 | 1.239 | 1.009 | 1.125 | 1.087 | 0.559 | 1.113 | 0.202 | 0.386 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14998
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — |
15-46
|
0.811
|
— | — |
0.000
|
— | — |
0.295
|
0.343
|
0.346
|
0.578
|
0.107
|
0.229
|
0.115
|
0.041
|
0.146
|
0.041
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012122
|
1.000
|
1.000
|
Hsc_gene_6328.t1
|
Hsc_gene_6328.t1
|
— |
P00491.2 Purine nucleoside phosphorylase [Homo sapiens]
|
KAI1710623.1 phosphorylase superfamily domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003824|GO:0004731|GO:0006139|GO:0009116
|
GO:0003674_0.787|GO:0005575_0.668|GO:0110165_0.663|GO:0008150_0.662|GO:0003824_0.661|GO:0016740_0.592|GO:0016757_0.554|GO:0008152_0.536|GO:0004731_0.527|GO:0016763_0.527|GO:0005622_0.506
|
IPR000845+124-375+|IPR011268+101-379_102-375_124-375+|IPR011270+124-375+|IPR035994+100-381_108-379+
|
— |
PF01048+124-375+Phosphorylase_superfamily
|
— |
PTHR11904+101-379+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-381
|
3k8q_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.826
|
40875.950
|
6.861
|
2.500
|
22.047
|
8.924
|
40.945
|
59.055
|
12.073
|
9.974
|
54.593
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
darkred
|
1830.552
|
102.426
|
716.453
|
996.136
|
1674.401
|
1017.744
|
1537.879
|
10647.676
|
17.065
|
1736.098
|
999.370
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.581
|
3.143
|
0.581
|
0.718
|
-0.703
|
0.606
|
3.277
|
-2.646
|
-6.811
|
6.061
|
— | — | — |
No JSON data available for plots.