Hg_chrom8_TN10mRNA_15871
Organism: Heterodera glycines Gene Locus: chr8:6257080-6257831 Feature type: polypeptideProtein Sequence
Length: 193
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.024 | 0.843 | 0.565 | 0.179 | 1.382 | 1.329 | 0.185 | 0.777 | 1.497 | 1.12 | 0.628 | 1.219 | 2.015 | 0.697 | 0.846 | 1.48 | 0.764 | 1.178 | 1.594 | 1.829 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15001
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-Not_Clustered
|
0.595
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
endoplasmic_reticulum
|
— | — |
21-47
|
0.991
|
— | — | — | — |
0.000
|
— | — |
0.215
|
0.373
|
0.011
|
0.225
|
0.527
|
0.384
|
0.330
|
0.028
|
0.119
|
0.214
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012123
|
1.000
|
1.000
|
Hsc_gene_6330.t1
|
Hsc_gene_6330.t1
|
— | — |
KAI1716689.1 TB2/DP1, HVA22 family domain-containing protein [Ditylenchus destructor]
|
No
|
0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.840|GO:0009987_0.790|GO:0005575_0.766|GO:0110165_0.759|GO:0016020_0.710|GO:0071944_0.669|GO:0005622_0.665|GO:0005886_0.656|GO:0005737_0.648|GO:0043226_0.628|GO:0043229_0.607|GO:0043227_0.599|GO:0043231_0.586|GO:0071840_0.550|GO:0016043_0.547|GO:0005773_0.529|GO:0012505_0.507
|
IPR004345+18-93+
|
— |
PF03134+18-93+TB2/DP1,_HVA22_family
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
172-193
|
1.000
|
1-171
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.635
|
22411.520
|
4.851
|
-4.500
|
21.244
|
17.098
|
45.078
|
54.922
|
9.845
|
11.399
|
44.041
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
885.905
|
582.139
|
381.942
|
419.956
|
574.260
|
661.380
|
533.806
|
522.462
|
382.948
|
2210.145
|
1427.061
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.839
|
-0.609
|
0.246
|
0.420
|
0.218
|
-0.304
|
-0.446
|
— |
-2.623
|
— | — | — | — |
No JSON data available for plots.