Hg_chrom8_TN10mRNA_15872
Organism: Heterodera glycines Gene Locus: chr8:6257995-6259637 Feature type: polypeptideProtein Sequence
Length: 409
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.597 | 1.137 | 0.889 | 0.337 | 0.896 | 1.379 | 0.873 | 1.345 | 0.924 | 0.859 | 0.63 | 1.726 | 1.019 | 1.317 | 1.247 | 2.096 | 0.962 | 0.815 | 0.94 | 0.575 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15002
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.571
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
nucleus
|
— | — | — | — |
45-70
|
0.995
|
— | — |
0.000
|
— | — |
0.666
|
0.083
|
0.027
|
0.438
|
0.141
|
0.149
|
0.162
|
0.038
|
0.134
|
0.025
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012124
|
1.000
|
1.000
|
Hsc_gene_6331.t1
|
Hsc_gene_6331.t1
|
— |
Q09601.2 Nucleoporin NUP35 [Caenorhabditis elegans]
|
KAF7638205.1 RRM Nup35-type domain-containing protein [Meloidogyne graminicola]
|
No
|
0.190
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0006913|GO:0017056|GO:0031965
|
GO:0005575_0.756|GO:0008150_0.747|GO:0110165_0.747|GO:0005622_0.698|GO:0016020_0.668|GO:0043226_0.660|GO:0043229_0.660|GO:0043227_0.615|GO:0043231_0.603|GO:0005634_0.562
|
IPR007846+209-289_211-290+|IPR012677+212-283+|IPR017389+125-396+|IPR035979+213-286+
|
— |
PF05172+209-289+Nup53/35/40-type_RNA_recognition_motif
|
G3DSA:3.30.70.330:FF:000095+211-283+Putative_Nucleoporin_NUP53
|
PTHR21527+125-396+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
88-217;289-409
|
2.000
|
1-87;218-288
|
4lir_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.947
|
44905.930
|
7.535
|
5.500
|
23.227
|
9.535
|
54.034
|
45.966
|
12.958
|
10.269
|
55.990
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
midnightblue
|
943.324
|
700.135
|
721.301
|
833.791
|
1023.234
|
841.571
|
1504.465
|
834.098
|
352.755
|
1440.503
|
974.325
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.188
|
0.115
|
0.319
|
0.263
|
-0.267
|
0.849
|
— |
0.994
|
— | — | — | — | — |
No JSON data available for plots.