Hg_chrom8_TN10mRNA_15873
Organism: Heterodera glycines Gene Locus: chr8:6260927-6263199 Feature type: polypeptideProtein Sequence
Length: 338
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.204 | 1.307 | 0.538 | 0.612 | 1.085 | 1.593 | 0.845 | 0.888 | 0.855 | 0.6 | 0.897 | 2.262 | 1.315 | 1.991 | 1.811 | 0.845 | 0.922 | 0.493 | 0.455 | 0.087 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15003
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
NKRAKKRKREKVAK,KKRKGTRTDRAQIHPQRRR,KRKGTRTDRAQIHPQRRRG,RKGTRTDRAQIHPQRRRGM
|
28-48
|
0.998
|
— | — | — | — |
0.000
|
— | — |
0.955
|
0.056
|
0.019
|
0.258
|
0.022
|
0.012
|
0.016
|
0.008
|
0.026
|
0.072
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012125
|
1.000
|
1.000
|
Hsc_gene_6332.t1
|
Hsc_gene_6332.t1
|
— | — |
KAI3411983.1 hypothetical protein GPALN_002037 [Globodera pallida]
|
No
|
0.430
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR013087+290-318_292-313+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-78;137-338
|
1.000
|
79-136
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.897
|
37332.450
|
10.770
|
21.000
|
26.036
|
7.396
|
49.408
|
50.592
|
16.568
|
9.467
|
52.959
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
40.150
|
38.816
|
86.709
|
27.617
|
15.445
|
30.442
|
63.885
|
84.760
|
52.523
|
5.888
|
25.875
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.932
|
-0.628
|
-1.544
|
-0.864
|
0.990
|
1.080
|
1.377
|
— | — | — | — | — | — |
No JSON data available for plots.