Hg_chrom8_TN10mRNA_15875
Organism: Heterodera glycines Gene Locus: chr8:6263205-6266265 Feature type: polypeptideProtein Sequence
Length: 464
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.178 | 0.802 | 0.47 | 1.115 | 0.934 | 0.884 | 0.718 | 1.185 | 1.533 | 1.544 | 0.425 | 1.902 | 2.933 | 0.539 | 0.88 | 0.954 | 0.742 | 0.914 | 1.16 | 0.697 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_15004
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.856
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — |
0.735
|
0.000
|
11.000
|
— |
0.100
|
0.196
|
0.026
|
0.081
|
0.625
|
0.571
|
0.414
|
0.073
|
0.431
|
0.032
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002506
|
2.000
|
2.000
|
Hsc_gene_6333.t1;Hsc_gene_6333.t2
|
Hsc_gene_6333.t1;Hsc_gene_6333.t2
|
— |
Q921Y4.1 Molybdate-anion transporter [Mus musculus]
|
CDJ86726.1 Protein of unknown function DUF791 domain containing protein [Haemonchus contortus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0015098|GO:0015689|GO:0016020
|
GO:0008150_0.955|GO:0005575_0.920|GO:0110165_0.920|GO:0009987_0.910|GO:0016020_0.870|GO:0051179_0.870|GO:0003674_0.867|GO:0006810_0.867|GO:0051234_0.867|GO:0055085_0.834|GO:0005215_0.771|GO:0022857_0.771|GO:0015318_0.705|GO:0015698_0.697|GO:0015689_0.670|GO:0015103_0.669|GO:0015098_0.650
|
IPR008509+2-416_3-329+|IPR036259+40-411_41-420+
|
— |
PF05631+3-329+Sugar-tranasporters,_12_TM
|
— |
PTHR23516+2-416+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
443-464
|
1.000
|
1-442
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.496
|
52173.020
|
6.554
|
0.500
|
17.672
|
16.810
|
35.776
|
64.224
|
9.483
|
8.190
|
45.474
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
darkturquoise
|
562.201
|
463.895
|
378.226
|
143.240
|
838.371
|
1176.212
|
993.707
|
909.299
|
606.605
|
166.069
|
354.871
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.525
|
-1.833
|
-1.292
|
2.516
|
0.504
|
-0.234
|
-0.476
|
— | — | — | — | — | — |